Variant report

Variant	rs9880301
Chromosome Location	chr3:102096662-102096663
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10048918	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10212280	1.00[CHB][hapmap]
rs1025587	1.00[CHB][hapmap]
rs11708991	1.00[CHB][hapmap]
rs11721106	1.00[CHB][hapmap]
rs11926310	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12330429	1.00[CHB][hapmap]
rs13314775	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13317566	1.00[CHB][hapmap]
rs13318339	1.00[CHB][hapmap]
rs13320972	1.00[CHB][hapmap]
rs1435209	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1479367	1.00[CHB][hapmap]
rs1479368	1.00[CHB][hapmap]
rs1479369	1.00[CHB][hapmap]
rs1479371	1.00[CHB][hapmap]
rs1479372	1.00[CHB][hapmap]
rs16844949	1.00[CHB][hapmap]
rs16844965	1.00[CHB][hapmap]
rs16844969	1.00[CHB][hapmap]
rs16844973	1.00[CHB][hapmap]
rs2127287	1.00[CHB][hapmap]
rs2127289	1.00[CHB][hapmap]
rs2398725	1.00[CHB][hapmap]
rs28523760	1.00[ASN][1000 genomes]
rs28558223	1.00[ASN][1000 genomes]
rs28626707	1.00[ASN][1000 genomes]
rs4635682	1.00[CHB][hapmap]
rs6441658	1.00[CHB][hapmap]
rs6441659	1.00[CHB][hapmap]
rs6441660	1.00[CHB][hapmap]
rs6441661	1.00[CHB][hapmap]
rs67420248	1.00[ASN][1000 genomes]
rs6768032	1.00[CHB][hapmap]
rs6768311	1.00[CHB][hapmap]
rs6771629	1.00[CHB][hapmap]
rs6772839	1.00[CHB][hapmap]
rs6778404	1.00[CHB][hapmap]
rs6781453	1.00[CHB][hapmap]
rs6781765	1.00[CHB][hapmap]
rs6786800	1.00[CHB][hapmap]
rs73157661	1.00[ASN][1000 genomes]
rs7616427	1.00[CHB][hapmap]
rs7619156	1.00[CHB][hapmap]
rs7621246	1.00[CHB][hapmap]
rs7623736	1.00[CHB][hapmap]
rs7636808	1.00[CHB][hapmap]
rs7650734	1.00[CHB][hapmap]
rs7652085	1.00[CHB][hapmap]
rs9290688	1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812893	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9814988	1.00[ASN][1000 genomes]
rs9815746	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9819718	1.00[CHB][hapmap]
rs9821512	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9822597	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9822998	1.00[CHB][hapmap]
rs9823926	1.00[ASN][1000 genomes]
rs9825736	1.00[CHB][hapmap]
rs9826330	1.00[ASN][1000 genomes]
rs9828984	1.00[CHB][hapmap]
rs9829127	1.00[CHB][hapmap]
rs9834628	1.00[CHB][hapmap]
rs9835728	1.00[CHB][hapmap]
rs9840010	1.00[ASN][1000 genomes]
rs9842508	1.00[ASN][1000 genomes]
rs9843713	1.00[CHB][hapmap]
rs9847260	1.00[ASN][1000 genomes]
rs985375	1.00[CHB][hapmap]
rs9854091	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9860680	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs9862517	1.00[CHB][hapmap]
rs9862645	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9862862	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9863666	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863720	1.00[ASN][1000 genomes]
rs9864968	1.00[CHB][hapmap]
rs9865839	1.00[CHB][hapmap]
rs9866230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868222	1.00[CHB][hapmap]
rs9869334	1.00[CHB][hapmap]
rs9869800	1.00[ASN][1000 genomes]
rs9872995	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9873657	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9882177	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883410	1.00[CHB][hapmap]
rs9883750	1.00[ASN][1000 genomes]
rs9883780	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv460790	chr3:102089007-102100781	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv460791	chr3:102089007-102100781	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv591189	chr3:102089007-102100781	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102096400-102097200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:102096400-102097200	Enhancers	NHEK	skin
3	chr3:102096400-102098000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:102096600-102097600	Enhancers	HMEC	breast
5	chr3:102096600-102098000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links