Variant report
| Variant | rs9842508 |
|---|---|
| Chromosome Location | chr3:102013555-102013556 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10048918 | 1.00[ASN][1000 genomes] |
| rs11926310 | 1.00[ASN][1000 genomes] |
| rs13314775 | 1.00[ASN][1000 genomes] |
| rs1435209 | 1.00[ASN][1000 genomes] |
| rs28523760 | 1.00[ASN][1000 genomes] |
| rs28558223 | 1.00[ASN][1000 genomes] |
| rs28626707 | 1.00[ASN][1000 genomes] |
| rs67420248 | 1.00[ASN][1000 genomes] |
| rs73157661 | 1.00[ASN][1000 genomes] |
| rs9290688 | 1.00[ASN][1000 genomes] |
| rs9812893 | 1.00[ASN][1000 genomes] |
| rs9814988 | 1.00[ASN][1000 genomes] |
| rs9815746 | 1.00[ASN][1000 genomes] |
| rs9821512 | 1.00[ASN][1000 genomes] |
| rs9822597 | 1.00[ASN][1000 genomes] |
| rs9823926 | 1.00[ASN][1000 genomes] |
| rs9826330 | 1.00[ASN][1000 genomes] |
| rs9840010 | 1.00[ASN][1000 genomes] |
| rs9847260 | 1.00[ASN][1000 genomes] |
| rs9854091 | 1.00[ASN][1000 genomes] |
| rs9862645 | 1.00[ASN][1000 genomes] |
| rs9862862 | 1.00[ASN][1000 genomes] |
| rs9863666 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9863720 | 1.00[ASN][1000 genomes] |
| rs9866230 | 1.00[ASN][1000 genomes] |
| rs9869800 | 1.00[ASN][1000 genomes] |
| rs9872995 | 1.00[ASN][1000 genomes] |
| rs9873657 | 1.00[ASN][1000 genomes] |
| rs9880301 | 1.00[ASN][1000 genomes] |
| rs9882177 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9883750 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv497784 | chr3:101315009-102092989 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:101968400-102016200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr3:102012800-102014600 | Enhancers | HUES48 Cell Line | embryonic stem cell |
