Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10048918	1.00[ASN][1000 genomes]
rs11926310	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13314775	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1435209	1.00[ASN][1000 genomes]
rs28523760	1.00[ASN][1000 genomes]
rs28558223	1.00[ASN][1000 genomes]
rs28626707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67420248	1.00[ASN][1000 genomes]
rs73157661	1.00[ASN][1000 genomes]
rs9290688	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812893	1.00[ASN][1000 genomes]
rs9814988	1.00[ASN][1000 genomes]
rs9815746	1.00[ASN][1000 genomes]
rs9821512	1.00[ASN][1000 genomes]
rs9822597	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823926	1.00[ASN][1000 genomes]
rs9826330	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840010	1.00[ASN][1000 genomes]
rs9842508	1.00[ASN][1000 genomes]
rs9847260	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854091	1.00[ASN][1000 genomes]
rs9862645	1.00[ASN][1000 genomes]
rs9862862	1.00[ASN][1000 genomes]
rs9863666	1.00[ASN][1000 genomes]
rs9866230	1.00[ASN][1000 genomes]
rs9869800	1.00[ASN][1000 genomes]
rs9872995	1.00[ASN][1000 genomes]
rs9873657	1.00[ASN][1000 genomes]
rs9880301	1.00[ASN][1000 genomes]
rs9882177	1.00[ASN][1000 genomes]
rs9883750	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102134600-102144200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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