Variant report

Variant	rs73157661
Chromosome Location	chr3:102093159-102093160
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10048918	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926310	1.00[ASN][1000 genomes]
rs13314775	1.00[ASN][1000 genomes]
rs1435209	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28523760	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28558223	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626707	1.00[ASN][1000 genomes]
rs67420248	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9290688	1.00[ASN][1000 genomes]
rs9812893	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814988	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815746	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821512	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822597	1.00[ASN][1000 genomes]
rs9823926	1.00[ASN][1000 genomes]
rs9826330	1.00[ASN][1000 genomes]
rs9840010	1.00[ASN][1000 genomes]
rs9842508	1.00[ASN][1000 genomes]
rs9847260	1.00[ASN][1000 genomes]
rs9854091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862645	1.00[ASN][1000 genomes]
rs9862862	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863666	1.00[ASN][1000 genomes]
rs9863720	1.00[ASN][1000 genomes]
rs9866230	1.00[ASN][1000 genomes]
rs9869800	1.00[ASN][1000 genomes]
rs9872995	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873657	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880301	1.00[ASN][1000 genomes]
rs9882177	1.00[ASN][1000 genomes]
rs9883750	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv460790	chr3:102089007-102100781	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv460791	chr3:102089007-102100781	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv591189	chr3:102089007-102100781	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3435861	chr3:102092827-102095261	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102075600-102096600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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