Variant report

Variant	rs9872995
Chromosome Location	chr3:102037790-102037791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10048918	1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212280	1.00[CHB][hapmap]
rs1025587	1.00[CHB][hapmap]
rs11708991	1.00[CHB][hapmap]
rs11721106	1.00[CHB][hapmap]
rs11926310	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12330429	1.00[CHB][hapmap]
rs13314775	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13317566	1.00[CHB][hapmap]
rs13318339	1.00[CHB][hapmap]
rs13320972	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1435209	0.86[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1479367	1.00[CHB][hapmap]
rs1479368	1.00[CHB][hapmap]
rs1479369	1.00[CHB][hapmap]
rs1479371	1.00[CHB][hapmap]
rs1479372	1.00[CHB][hapmap]
rs16844949	1.00[CHB][hapmap]
rs16844965	1.00[CHB][hapmap]
rs16844969	1.00[CHB][hapmap]
rs16844973	1.00[CHB][hapmap]
rs2127287	1.00[CHB][hapmap]
rs2127289	1.00[CHB][hapmap]
rs2398725	1.00[CHB][hapmap]
rs28523760	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28558223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626707	1.00[ASN][1000 genomes]
rs4635682	1.00[CHB][hapmap]
rs6441658	1.00[CHB][hapmap]
rs6441659	1.00[CHB][hapmap]
rs6441660	1.00[CHB][hapmap]
rs6441661	1.00[CHB][hapmap]
rs67420248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768032	1.00[CHB][hapmap]
rs6768311	1.00[CHB][hapmap]
rs6771629	1.00[CHB][hapmap]
rs6772839	1.00[CHB][hapmap]
rs6778404	1.00[CHB][hapmap]
rs6781453	1.00[CHB][hapmap]
rs6781765	1.00[CHB][hapmap]
rs6786800	1.00[CHB][hapmap]
rs73157661	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616427	1.00[CHB][hapmap]
rs7619156	1.00[CHB][hapmap]
rs7621246	1.00[CHB][hapmap]
rs7623736	1.00[CHB][hapmap]
rs7636808	1.00[CHB][hapmap]
rs7650734	1.00[CHB][hapmap]
rs7652085	1.00[CHB][hapmap]
rs9290688	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9812893	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819718	1.00[CHB][hapmap]
rs9821512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822597	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9822998	1.00[CHB][hapmap]
rs9823926	1.00[ASN][1000 genomes]
rs9825736	1.00[CHB][hapmap]
rs9826330	1.00[ASN][1000 genomes]
rs9828984	1.00[CHB][hapmap]
rs9829127	1.00[CHB][hapmap]
rs9834628	1.00[CHB][hapmap]
rs9835728	1.00[CHB][hapmap]
rs9840010	1.00[ASN][1000 genomes]
rs9842508	1.00[ASN][1000 genomes]
rs9843713	1.00[CHB][hapmap]
rs9847260	1.00[ASN][1000 genomes]
rs985375	1.00[CHB][hapmap]
rs9854091	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860680	1.00[CHB][hapmap]
rs9862517	1.00[CHB][hapmap]
rs9862645	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9862862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863666	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9863720	1.00[ASN][1000 genomes]
rs9864968	1.00[CHB][hapmap]
rs9865839	1.00[CHB][hapmap]
rs9866230	1.00[ASN][1000 genomes]
rs9868222	1.00[CHB][hapmap]
rs9869334	1.00[CHB][hapmap]
rs9869800	1.00[ASN][1000 genomes]
rs9873657	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880301	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9882177	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9883410	1.00[CHB][hapmap]
rs9883750	1.00[ASN][1000 genomes]
rs9883780	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1014077	chr3:102032787-102066539	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102029400-102040400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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