Variant report

Variant	rs28607954
Chromosome Location	chr15:92997621-92997622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16947074	1.00[EUR][1000 genomes]
rs16947087	1.00[EUR][1000 genomes]
rs56356816	1.00[EUR][1000 genomes]
rs56411549	1.00[EUR][1000 genomes]
rs60198063	1.00[EUR][1000 genomes]
rs60202325	1.00[EUR][1000 genomes]
rs60773454	1.00[EUR][1000 genomes]
rs61648904	1.00[EUR][1000 genomes]
rs73452882	1.00[EUR][1000 genomes]
rs73452888	1.00[EUR][1000 genomes]
rs73531783	1.00[EUR][1000 genomes]
rs74029102	1.00[EUR][1000 genomes]
rs74029103	1.00[EUR][1000 genomes]
rs74029116	1.00[EUR][1000 genomes]
rs74029127	1.00[EUR][1000 genomes]
rs74029128	1.00[EUR][1000 genomes]
rs74029129	1.00[EUR][1000 genomes]
rs74029130	1.00[EUR][1000 genomes]
rs74029131	1.00[EUR][1000 genomes]
rs74029132	1.00[EUR][1000 genomes]
rs74029133	1.00[EUR][1000 genomes]
rs74029134	1.00[EUR][1000 genomes]
rs74029135	1.00[EUR][1000 genomes]
rs74029136	1.00[EUR][1000 genomes]
rs74029137	1.00[EUR][1000 genomes]
rs74029141	1.00[EUR][1000 genomes]
rs74029146	1.00[EUR][1000 genomes]
rs74029147	1.00[EUR][1000 genomes]
rs74031608	1.00[EUR][1000 genomes]
rs74031611	1.00[EUR][1000 genomes]
rs74031613	1.00[EUR][1000 genomes]
rs74031614	1.00[EUR][1000 genomes]
rs74031617	1.00[EUR][1000 genomes]
rs74031618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92953400-92997800	Weak transcription	Fetal Brain Male	brain
2	chr15:92957200-93006400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:92972000-93011800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:92972800-93011400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:92973400-93012200	Strong transcription	Brain Germinal Matrix	brain
6	chr15:92973600-93006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:92973600-93008800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:92973600-93011400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:92973800-93003800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:92974200-92998000	Strong transcription	Fetal Brain Female	brain
11	chr15:92977600-92999000	Weak transcription	Fetal Heart	heart
12	chr15:92982400-93011800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:92985800-93006600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:92989600-93001800	Weak transcription	Fetal Lung	lung
15	chr15:92991800-93007400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:92995000-92998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:92995000-93007400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:92995200-93006600	Weak transcription	Fetal Stomach	stomach
19	chr15:92995600-93007000	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:92996600-93003200	Weak transcription	HSMM	muscle
21	chr15:92997200-93001600	Weak transcription	Gastric	stomach
22	chr15:92997400-93011400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:92997600-92998000	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:92997600-92998400	Weak transcription	HSMMtube	muscle
25	chr15:92997600-93000600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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