Variant report

Variant	rs74029103
Chromosome Location	chr15:93116336-93116337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:93116335-93116385	HCM	heart:	n/a
2	chr15:93116335-93116385	HEK293	kidney:	embryo
3	chr15:93116335-93116385	HRE	kidney:	n/a
4	chr15:93116335-93116385	SK-N-SH_RA	brain:	n/a
5	chr15:93116335-93116385	HepG2	liver:	n/a
6	chr15:93116335-93116385	AG09309	skin:	n/a
7	chr15:93116335-93116385	ECC-1	luminal epithelium:	n/a
8	chr15:93116335-93116385	HAEpiC	amniotic membrane:	n/a
9	chr15:93116335-93116385	Hela-S3	cervix:	n/a
10	chr15:93116335-93116385	GM19239	blood:	n/a
11	chr15:93116335-93116385	HNPCEpiC	eye:	n/a
12	chr15:93116335-93116385	NHBE	bronchial:	n/a
13	chr15:93116335-93116385	NT2-D1	testis:	n/a
14	chr15:93116335-93116385	MCF10A-Er-Src	breast:	n/a
15	chr15:93116335-93116385	HRPEpiC	eye:	n/a
16	chr15:93116335-93116385	RPTEC	kidney:	n/a
17	chr15:93116335-93116385	MCF-7	breast:	n/a
18	chr15:93116335-93116385	AG04450	lung:	fetal
19	chr15:93116335-93116385	HRCEpiC	kidney:	n/a
20	chr15:93116335-93116385	GM06990	blood:	n/a
21	chr15:93116335-93116385	LNCaP	prostate:	n/a
22	chr15:93116335-93116385	AoSMC	blood vessel:	n/a
23	chr15:93116335-93116385	HMEC	breast:	n/a
24	chr15:93116335-93116385	GM12892	blood:	n/a
25	chr15:93116335-93116385	HUVEC	blood vessel:	n/a
26	chr15:93116335-93116385	NHDF-neo	bronchial:	n/a
27	chr15:93116335-93116385	IMR90	lung:	fetal
28	chr15:93116335-93116385	AG10803	skin:	n/a
29	chr15:93116335-93116385	HPAEpiC	pulmonary alveolar:	n/a
30	chr15:93116335-93116385	HCF	heart:	n/a
31	chr15:93116335-93116385	HEEpiC	esophagus:	n/a
32	chr15:93116335-93116385	ProgFib	skin:	n/a
33	chr15:93116335-93116385	A549	lung:	n/a
34	chr15:93116335-93116385	SK-N-MC	brain:	n/a
35	chr15:93116335-93116385	H1-hESC	embryonic stem cell:	embryo
36	chr15:93116335-93116385	T-47D	breast:	n/a
37	chr15:93116335-93116385	NH-A	brain:	n/a
38	chr15:93116335-93116385	CMK	blood:	n/a
39	chr15:93116335-93116385	BE2_C	brain:	n/a
40	chr15:93116335-93116385	HIPEpiC	eye:	n/a
41	chr15:93116335-93116385	AG04449	skin:	fetal
42	chr15:93116335-93116385	Jurkat	blood:	n/a
43	chr15:93116335-93116385	HCPEpiC	choroid plexus:	n/a
44	chr15:93116335-93116385	SKMC	muscle:	n/a
45	chr15:93116335-93116385	U87	brain:	n/a
46	chr15:93116335-93116385	Hepatocyte	liver:	n/a
47	chr15:93116335-93116385	PrEC	prostate:	n/a
48	chr15:93116335-93116385	HL-60	blood:	n/a
49	chr15:93116335-93116385	PFSK-1	brain:	n/a
50	chr15:93116335-93116385	AG09319	gingival:	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM174B-2	chr15:93114431-93127864	XLOC_011584
2	lnc-FAM174B-2	chr15:93114416-93117042	NONHSAT048525

No data

Variant related genes	Relation type
LINC00930	CpG island

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16947074	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16947087	1.00[EUR][1000 genomes]
rs28607954	1.00[EUR][1000 genomes]
rs56356816	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56411549	1.00[EUR][1000 genomes]
rs60198063	1.00[EUR][1000 genomes]
rs60202325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60773454	1.00[EUR][1000 genomes]
rs61648904	1.00[EUR][1000 genomes]
rs73452882	1.00[EUR][1000 genomes]
rs73452888	1.00[EUR][1000 genomes]
rs73454733	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73531783	1.00[EUR][1000 genomes]
rs74029102	1.00[EUR][1000 genomes]
rs74029116	1.00[EUR][1000 genomes]
rs74029127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029128	1.00[EUR][1000 genomes]
rs74029129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029130	1.00[EUR][1000 genomes]
rs74029131	1.00[EUR][1000 genomes]
rs74029132	1.00[EUR][1000 genomes]
rs74029133	1.00[EUR][1000 genomes]
rs74029134	1.00[EUR][1000 genomes]
rs74029135	1.00[EUR][1000 genomes]
rs74029136	1.00[EUR][1000 genomes]
rs74029137	1.00[EUR][1000 genomes]
rs74029141	1.00[EUR][1000 genomes]
rs74029146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029147	1.00[EUR][1000 genomes]
rs74029148	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029150	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74031608	1.00[EUR][1000 genomes]
rs74031611	1.00[EUR][1000 genomes]
rs74031613	1.00[EUR][1000 genomes]
rs74031614	1.00[EUR][1000 genomes]
rs74031617	1.00[EUR][1000 genomes]
rs74031618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93106000-93125800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93113200-93116800	Enhancers	Fetal Muscle Leg	muscle
3	chr15:93113800-93122200	Weak transcription	Right Ventricle	heart
4	chr15:93113800-93134400	Weak transcription	Right Atrium	heart
5	chr15:93114200-93117600	Weak transcription	Fetal Muscle Trunk	muscle

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