Variant report

Variant	rs56411549
Chromosome Location	chr15:93139102-93139103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93137271..93139348-chr15:93186497..93189064,2	MCF-7	breast:
2	chr15:93064930..93065584-chr15:93138463..93139251,2	MCF-7	breast:
3	chr15:93064380..93064919-chr15:93138833..93139430,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM174B-1	chr15:93138915-93139933	XLOC_011585
2	lnc-FAM174B-1	chr15:93135809-93139618	ENSG00000260337.1

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16947074	1.00[EUR][1000 genomes]
rs16947087	1.00[EUR][1000 genomes]
rs28607954	1.00[EUR][1000 genomes]
rs56356816	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60198063	1.00[EUR][1000 genomes]
rs60202325	1.00[EUR][1000 genomes]
rs60773454	1.00[EUR][1000 genomes]
rs61648904	1.00[EUR][1000 genomes]
rs7162641	1.00[ASN][1000 genomes]
rs7169192	1.00[ASN][1000 genomes]
rs73452882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73452888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73454733	1.00[EUR][1000 genomes]
rs73531783	1.00[EUR][1000 genomes]
rs74029102	1.00[EUR][1000 genomes]
rs74029103	1.00[EUR][1000 genomes]
rs74029116	1.00[EUR][1000 genomes]
rs74029127	1.00[EUR][1000 genomes]
rs74029128	1.00[EUR][1000 genomes]
rs74029129	1.00[EUR][1000 genomes]
rs74029130	1.00[EUR][1000 genomes]
rs74029131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029132	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029141	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029147	1.00[EUR][1000 genomes]
rs74029148	1.00[EUR][1000 genomes]
rs74029149	1.00[EUR][1000 genomes]
rs74029150	1.00[EUR][1000 genomes]
rs74029153	1.00[EUR][1000 genomes]
rs74031608	1.00[EUR][1000 genomes]
rs74031611	1.00[EUR][1000 genomes]
rs74031613	1.00[EUR][1000 genomes]
rs74031614	1.00[EUR][1000 genomes]
rs74031617	1.00[EUR][1000 genomes]
rs74031618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93128400-93152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93135200-93139200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:93136000-93139800	Weak transcription	Fetal Heart	heart
4	chr15:93136800-93141400	Weak transcription	Lung	lung
5	chr15:93138400-93140600	Enhancers	Left Ventricle	heart
6	chr15:93138400-93143400	Enhancers	HSMMtube	muscle
7	chr15:93138800-93139200	Weak transcription	Fetal Lung	lung
8	chr15:93139000-93139400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr15:93139000-93139600	Enhancers	Fetal Muscle Trunk	muscle
10	chr15:93139000-93140400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:93139000-93141000	Enhancers	Right Ventricle	heart
12	chr15:93139000-93143200	Enhancers	Fetal Muscle Leg	muscle

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