Variant report

Variant	rs74029153
Chromosome Location	chr15:93158661-93158662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93153498..93156346-chr15:93158653..93161717,3	K562	blood:
2	chr15:93156262..93161664-chr15:93196023..93200716,9	MCF-7	breast:
3	chr15:93155996..93163499-chr15:93183947..93191862,21	MCF-7	breast:
4	chr15:93154756..93169106-chr15:93177301..93183879,27	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs16947074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16947087	1.00[EUR][1000 genomes]
rs56356816	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56411549	1.00[EUR][1000 genomes]
rs60198063	1.00[EUR][1000 genomes]
rs60202325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60773454	1.00[EUR][1000 genomes]
rs61648904	1.00[EUR][1000 genomes]
rs73452882	1.00[EUR][1000 genomes]
rs73452888	1.00[EUR][1000 genomes]
rs73454733	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73531783	1.00[EUR][1000 genomes]
rs74029102	1.00[EUR][1000 genomes]
rs74029103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029116	1.00[EUR][1000 genomes]
rs74029127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029128	1.00[EUR][1000 genomes]
rs74029129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029130	1.00[EUR][1000 genomes]
rs74029131	1.00[EUR][1000 genomes]
rs74029132	1.00[EUR][1000 genomes]
rs74029133	1.00[EUR][1000 genomes]
rs74029134	1.00[EUR][1000 genomes]
rs74029135	1.00[EUR][1000 genomes]
rs74029136	1.00[EUR][1000 genomes]
rs74029137	1.00[EUR][1000 genomes]
rs74029141	1.00[EUR][1000 genomes]
rs74029146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029147	1.00[EUR][1000 genomes]
rs74029148	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029149	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029150	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74031608	1.00[EUR][1000 genomes]
rs74031611	1.00[EUR][1000 genomes]
rs74031613	1.00[EUR][1000 genomes]
rs74031614	1.00[EUR][1000 genomes]
rs74031617	1.00[EUR][1000 genomes]
rs74031618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93139400-93159800	Weak transcription	Fetal Lung	lung
2	chr15:93142200-93160400	Weak transcription	Right Atrium	heart
3	chr15:93143600-93160000	Weak transcription	Right Ventricle	heart
4	chr15:93146800-93160000	Weak transcription	Psoas Muscle	Psoas
5	chr15:93150000-93160600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:93151200-93160200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:93151400-93167400	Weak transcription	Brain Germinal Matrix	brain
8	chr15:93151600-93159600	Weak transcription	HSMM	muscle
9	chr15:93151600-93178000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:93152800-93166800	Weak transcription	Esophagus	oesophagus
11	chr15:93153000-93159600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:93154200-93159800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:93154200-93159800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:93154200-93160000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:93154800-93160600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:93155000-93160600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:93155600-93159000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:93155800-93159600	Weak transcription	Ovary	ovary
19	chr15:93156000-93160200	Enhancers	Stomach Mucosa	stomach
20	chr15:93156000-93160400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:93156000-93167000	Weak transcription	Brain Anterior Caudate	brain
22	chr15:93156200-93159600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr15:93156400-93160200	Strong transcription	Fetal Stomach	stomach
24	chr15:93156400-93167600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:93156600-93162600	Weak transcription	Brain Angular Gyrus	brain
26	chr15:93156600-93162600	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:93156600-93163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:93156600-93163600	Enhancers	Pancreas	Pancrea
29	chr15:93156600-93168400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr15:93156800-93160400	Weak transcription	Colon Smooth Muscle	Colon
31	chr15:93156800-93162600	Weak transcription	Aorta	Aorta
32	chr15:93156800-93166600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:93157000-93162800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:93157200-93159000	Enhancers	Liver	Liver
35	chr15:93157200-93160200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:93157400-93159200	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr15:93157400-93159600	Weak transcription	Fetal Intestine Large	intestine
38	chr15:93157600-93159800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:93157600-93162400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr15:93157800-93159400	Enhancers	Fetal Thymus	thymus
41	chr15:93157800-93161600	Weak transcription	GM12878-XiMat	blood
42	chr15:93158000-93160000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr15:93158000-93160000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:93158000-93167600	Enhancers	Fetal Muscle Trunk	muscle
45	chr15:93158200-93159000	Enhancers	Gastric	stomach
46	chr15:93158400-93159400	Weak transcription	Fetal Intestine Small	intestine
47	chr15:93158400-93159400	Weak transcription	K562	blood
48	chr15:93158400-93159600	Weak transcription	Lung	lung
49	chr15:93158400-93159600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr15:93158400-93159600	Weak transcription	Rectal Mucosa Donor 31	rectum

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