Variant report

Variant	rs73454733
Chromosome Location	chr15:93161925-93161926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93153329..93154969-chr15:93161001..93162809,2	MCF-7	breast:
2	chr15:93160189..93163896-chr15:93165743..93168738,4	MCF-7	breast:
3	chr15:93160927..93163023-chr15:93285555..93287552,2	MCF-7	breast:
4	chr15:93155996..93163499-chr15:93183947..93191862,21	MCF-7	breast:
5	chr15:93161741..93163450-chr15:93197270..93199575,2	MCF-7	breast:
6	chr15:93154756..93169106-chr15:93177301..93183879,27	MCF-7	breast:
7	chr15:93143587..93145344-chr15:93159569..93162051,2	MCF-7	breast:
8	chr15:93160760..93163231-chr15:93168458..93170459,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259064	Chromatin interaction
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs16947074	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16947087	1.00[EUR][1000 genomes]
rs56356816	1.00[EUR][1000 genomes]
rs56411549	1.00[EUR][1000 genomes]
rs60198063	1.00[EUR][1000 genomes]
rs60202325	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60773454	1.00[EUR][1000 genomes]
rs61648904	1.00[EUR][1000 genomes]
rs73452882	1.00[EUR][1000 genomes]
rs73452888	1.00[EUR][1000 genomes]
rs73531783	1.00[EUR][1000 genomes]
rs74029102	1.00[EUR][1000 genomes]
rs74029103	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029116	1.00[EUR][1000 genomes]
rs74029127	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029128	1.00[EUR][1000 genomes]
rs74029129	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029130	1.00[EUR][1000 genomes]
rs74029131	1.00[EUR][1000 genomes]
rs74029132	1.00[EUR][1000 genomes]
rs74029133	1.00[EUR][1000 genomes]
rs74029134	1.00[EUR][1000 genomes]
rs74029135	1.00[EUR][1000 genomes]
rs74029136	1.00[EUR][1000 genomes]
rs74029137	1.00[EUR][1000 genomes]
rs74029141	1.00[EUR][1000 genomes]
rs74029146	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029147	1.00[EUR][1000 genomes]
rs74029148	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74029149	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029150	1.00[EUR][1000 genomes]
rs74029153	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74031608	1.00[EUR][1000 genomes]
rs74031611	1.00[EUR][1000 genomes]
rs74031613	1.00[EUR][1000 genomes]
rs74031614	1.00[EUR][1000 genomes]
rs74031617	1.00[EUR][1000 genomes]
rs74031618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93151400-93167400	Weak transcription	Brain Germinal Matrix	brain
2	chr15:93151600-93178000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:93152800-93166800	Weak transcription	Esophagus	oesophagus
4	chr15:93156000-93167000	Weak transcription	Brain Anterior Caudate	brain
5	chr15:93156400-93167600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:93156600-93162600	Weak transcription	Brain Angular Gyrus	brain
7	chr15:93156600-93162600	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:93156600-93163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:93156600-93163600	Enhancers	Pancreas	Pancrea
10	chr15:93156600-93168400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:93156800-93162600	Weak transcription	Aorta	Aorta
12	chr15:93156800-93166600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:93157000-93162800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:93157600-93162400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr15:93158000-93167600	Enhancers	Fetal Muscle Trunk	muscle
16	chr15:93158400-93163200	Weak transcription	Adipose Nuclei	Adipose
17	chr15:93158400-93164600	Enhancers	Fetal Muscle Leg	muscle
18	chr15:93158400-93167600	Weak transcription	Spleen	Spleen
19	chr15:93158600-93169800	Weak transcription	Primary T cells from cord blood	blood
20	chr15:93159400-93166400	Weak transcription	Fetal Thymus	thymus
21	chr15:93159600-93162600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr15:93159600-93163200	Enhancers	Fetal Intestine Large	intestine
23	chr15:93159600-93163400	Enhancers	Ovary	ovary
24	chr15:93159600-93165200	Enhancers	HUVEC	blood vessel
25	chr15:93159800-93162000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:93159800-93162000	Enhancers	Fetal Lung	lung
27	chr15:93159800-93162200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:93159800-93162600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:93160000-93162000	Enhancers	NH-A	brain
30	chr15:93160000-93162600	Enhancers	Liver	Liver
31	chr15:93160000-93163600	Enhancers	Left Ventricle	heart
32	chr15:93160200-93162800	Genic enhancers	Fetal Stomach	stomach
33	chr15:93160200-93172800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr15:93160400-93163400	Enhancers	Fetal Heart	heart
35	chr15:93160400-93163400	Enhancers	Right Atrium	heart
36	chr15:93160400-93164000	Enhancers	Colon Smooth Muscle	Colon
37	chr15:93160400-93164000	Enhancers	Rectal Smooth Muscle	rectum
38	chr15:93160800-93162400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:93160800-93163400	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr15:93160800-93164600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:93160800-93166000	Enhancers	Stomach Mucosa	stomach
42	chr15:93160800-93168600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr15:93161200-93162400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:93161200-93162400	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr15:93161200-93162600	Weak transcription	Psoas Muscle	Psoas
46	chr15:93161200-93162800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:93161200-93163200	Enhancers	K562	blood
48	chr15:93161200-93166800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:93161200-93167200	Weak transcription	Lung	lung
50	chr15:93161200-93170200	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links