Variant report

Variant	rs73452882
Chromosome Location	chr15:93143594-93143595
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93143236..93145258-chr15:93175927..93177616,2	MCF-7	breast:
2	chr15:93143587..93145344-chr15:93159569..93162051,2	MCF-7	breast:
3	chr15:93142176..93144157-chr15:93180474..93183283,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf32-1	chr15:93143568-93143775	ENSG00000258676
2	lnc-C15orf32-1	chr15:93141788-93143767	ENSG00000258676.2
3	lnc-C15orf32-1	chr15:93143568-93143766	NONHSAT049436

No data

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16947074	1.00[EUR][1000 genomes]
rs16947087	1.00[EUR][1000 genomes]
rs28607954	1.00[EUR][1000 genomes]
rs56356816	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56411549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60198063	1.00[EUR][1000 genomes]
rs60202325	1.00[EUR][1000 genomes]
rs60773454	1.00[EUR][1000 genomes]
rs61648904	1.00[EUR][1000 genomes]
rs7162641	1.00[ASN][1000 genomes]
rs7169192	1.00[ASN][1000 genomes]
rs73452888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73454733	1.00[EUR][1000 genomes]
rs73531783	1.00[EUR][1000 genomes]
rs74029102	1.00[EUR][1000 genomes]
rs74029103	1.00[EUR][1000 genomes]
rs74029116	1.00[EUR][1000 genomes]
rs74029127	1.00[EUR][1000 genomes]
rs74029128	1.00[EUR][1000 genomes]
rs74029129	1.00[EUR][1000 genomes]
rs74029130	1.00[EUR][1000 genomes]
rs74029131	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029132	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029133	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029134	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029135	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029136	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029137	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029147	1.00[EUR][1000 genomes]
rs74029148	1.00[EUR][1000 genomes]
rs74029149	1.00[EUR][1000 genomes]
rs74029150	1.00[EUR][1000 genomes]
rs74029153	1.00[EUR][1000 genomes]
rs74031608	1.00[EUR][1000 genomes]
rs74031611	1.00[EUR][1000 genomes]
rs74031613	1.00[EUR][1000 genomes]
rs74031614	1.00[EUR][1000 genomes]
rs74031617	1.00[EUR][1000 genomes]
rs74031618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93128400-93152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93139400-93143800	Enhancers	HSMM	muscle
3	chr15:93139400-93159800	Weak transcription	Fetal Lung	lung
4	chr15:93140600-93146600	Weak transcription	Esophagus	oesophagus
5	chr15:93142000-93143600	Enhancers	Brain Anterior Caudate	brain
6	chr15:93142000-93144800	Enhancers	Brain Angular Gyrus	brain
7	chr15:93142000-93145200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr15:93142000-93145400	Enhancers	Left Ventricle	heart
9	chr15:93142200-93145000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:93142200-93145200	Enhancers	Brain Cingulate Gyrus	brain
11	chr15:93142200-93156400	Weak transcription	Lung	lung
12	chr15:93142200-93160400	Weak transcription	Right Atrium	heart
13	chr15:93142400-93143600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:93142400-93145200	Enhancers	Brain Substantia Nigra	brain
15	chr15:93142400-93145400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:93142400-93152400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:93142600-93143600	Enhancers	NH-A	brain
18	chr15:93142600-93145000	Enhancers	Brain Hippocampus Middle	brain
19	chr15:93143000-93144200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:93143200-93144800	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:93143400-93143600	Enhancers	Right Ventricle	heart
22	chr15:93143400-93146800	Weak transcription	HSMMtube	muscle

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