Variant report

Variant	rs74029147
Chromosome Location	chr15:93155583-93155584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93154999..93156253-chr15:93226369..93227380,11	MCF-7	breast:
2	chr15:93155064..93156959-chr15:93181912..93184723,2	K562	blood:
3	chr15:93155302..93156114-chr15:93257721..93258317,3	MCF-7	breast:
4	chr15:93155453..93156028-chr15:93225494..93226105,2	MCF-7	breast:
5	chr15:93155538..93157198-chr15:93256729..93258273,2	MCF-7	breast:
6	chr15:93153498..93156346-chr15:93158653..93161717,3	K562	blood:
7	chr15:93151753..93155694-chr15:93155809..93157941,4	MCF-7	breast:
8	chr15:93064485..93065451-chr15:93155056..93156204,3	MCF-7	breast:
9	chr15:93153824..93155691-chr15:93224962..93227625,2	MCF-7	breast:
10	chr15:93154756..93169106-chr15:93177301..93183879,27	MCF-7	breast:
11	chr15:93154912..93156226-chr15:93226491..93227413,5	MCF-7	breast:
12	chr15:93155445..93158286-chr15:93162405..93165146,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16947074	1.00[EUR][1000 genomes]
rs16947087	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28607954	1.00[EUR][1000 genomes]
rs56356816	1.00[EUR][1000 genomes]
rs56411549	1.00[EUR][1000 genomes]
rs60198063	1.00[EUR][1000 genomes]
rs60202325	1.00[EUR][1000 genomes]
rs60773454	1.00[EUR][1000 genomes]
rs61648904	1.00[EUR][1000 genomes]
rs73452882	1.00[EUR][1000 genomes]
rs73452888	1.00[EUR][1000 genomes]
rs73454733	1.00[EUR][1000 genomes]
rs73531783	1.00[EUR][1000 genomes]
rs74029102	1.00[EUR][1000 genomes]
rs74029103	1.00[EUR][1000 genomes]
rs74029116	1.00[EUR][1000 genomes]
rs74029127	1.00[EUR][1000 genomes]
rs74029128	1.00[EUR][1000 genomes]
rs74029129	1.00[EUR][1000 genomes]
rs74029130	1.00[EUR][1000 genomes]
rs74029131	1.00[EUR][1000 genomes]
rs74029132	1.00[EUR][1000 genomes]
rs74029133	1.00[EUR][1000 genomes]
rs74029134	1.00[EUR][1000 genomes]
rs74029135	1.00[EUR][1000 genomes]
rs74029136	1.00[EUR][1000 genomes]
rs74029137	1.00[EUR][1000 genomes]
rs74029141	1.00[EUR][1000 genomes]
rs74029146	1.00[EUR][1000 genomes]
rs74029148	1.00[EUR][1000 genomes]
rs74029149	1.00[EUR][1000 genomes]
rs74029150	1.00[EUR][1000 genomes]
rs74029153	1.00[EUR][1000 genomes]
rs74031608	1.00[EUR][1000 genomes]
rs74031611	1.00[EUR][1000 genomes]
rs74031613	1.00[EUR][1000 genomes]
rs74031614	1.00[EUR][1000 genomes]
rs74031617	1.00[EUR][1000 genomes]
rs74031618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
6	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93139400-93159800	Weak transcription	Fetal Lung	lung
2	chr15:93142200-93156400	Weak transcription	Lung	lung
3	chr15:93142200-93160400	Weak transcription	Right Atrium	heart
4	chr15:93143600-93160000	Weak transcription	Right Ventricle	heart
5	chr15:93146800-93160000	Weak transcription	Psoas Muscle	Psoas
6	chr15:93150000-93155600	Weak transcription	Pancreas	Pancrea
7	chr15:93150000-93160600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:93150200-93157000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:93150400-93156200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:93150400-93156400	Weak transcription	Fetal Stomach	stomach
11	chr15:93151200-93157200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:93151200-93160200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:93151400-93157600	Weak transcription	Fetal Intestine Small	intestine
14	chr15:93151400-93167400	Weak transcription	Brain Germinal Matrix	brain
15	chr15:93151600-93158600	Weak transcription	HSMMtube	muscle
16	chr15:93151600-93159600	Weak transcription	HSMM	muscle
17	chr15:93151600-93178000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:93151800-93155600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:93152600-93158000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:93152800-93156000	Weak transcription	Stomach Mucosa	stomach
21	chr15:93152800-93166800	Weak transcription	Esophagus	oesophagus
22	chr15:93153000-93157200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:93153000-93159600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:93153200-93156200	Weak transcription	Gastric	stomach
25	chr15:93153600-93156800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr15:93153800-93156000	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:93154000-93156000	Weak transcription	Brain Substantia Nigra	brain
28	chr15:93154200-93155600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr15:93154200-93159800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:93154200-93159800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:93154200-93160000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:93154800-93160600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr15:93155000-93160600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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