Variant report

Variant	rs60773454
Chromosome Location	chr15:93012354-93012355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16947074	1.00[EUR][1000 genomes]
rs16947087	1.00[EUR][1000 genomes]
rs28607954	1.00[EUR][1000 genomes]
rs56356816	1.00[EUR][1000 genomes]
rs56411549	1.00[EUR][1000 genomes]
rs60198063	1.00[EUR][1000 genomes]
rs60202325	1.00[EUR][1000 genomes]
rs61648904	1.00[EUR][1000 genomes]
rs73452882	1.00[EUR][1000 genomes]
rs73452888	1.00[EUR][1000 genomes]
rs73454733	1.00[EUR][1000 genomes]
rs73531783	1.00[EUR][1000 genomes]
rs74029102	1.00[EUR][1000 genomes]
rs74029103	1.00[EUR][1000 genomes]
rs74029116	1.00[EUR][1000 genomes]
rs74029127	1.00[EUR][1000 genomes]
rs74029128	1.00[EUR][1000 genomes]
rs74029129	1.00[EUR][1000 genomes]
rs74029130	1.00[EUR][1000 genomes]
rs74029131	1.00[EUR][1000 genomes]
rs74029132	1.00[EUR][1000 genomes]
rs74029133	1.00[EUR][1000 genomes]
rs74029134	1.00[EUR][1000 genomes]
rs74029135	1.00[EUR][1000 genomes]
rs74029136	1.00[EUR][1000 genomes]
rs74029137	1.00[EUR][1000 genomes]
rs74029141	1.00[EUR][1000 genomes]
rs74029146	1.00[EUR][1000 genomes]
rs74029147	1.00[EUR][1000 genomes]
rs74029148	1.00[EUR][1000 genomes]
rs74029149	1.00[EUR][1000 genomes]
rs74029150	1.00[EUR][1000 genomes]
rs74029153	1.00[EUR][1000 genomes]
rs74031608	1.00[EUR][1000 genomes]
rs74031611	1.00[EUR][1000 genomes]
rs74031613	1.00[EUR][1000 genomes]
rs74031614	1.00[EUR][1000 genomes]
rs74031617	1.00[EUR][1000 genomes]
rs74031618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93000800-93013200	Strong transcription	Fetal Brain Female	brain
2	chr15:93001400-93015800	Weak transcription	Fetal Brain Male	brain
3	chr15:93008400-93014400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:93009800-93013400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:93010200-93012600	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:93010200-93015000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:93011200-93016600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:93011200-93017200	Weak transcription	Fetal Stomach	stomach
9	chr15:93011400-93012600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:93011600-93018000	Weak transcription	HSMMtube	muscle
11	chr15:93011800-93015000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:93011800-93015600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:93012200-93012600	Weak transcription	Brain Germinal Matrix	brain
14	chr15:93012200-93012800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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