Variant report

Variant	rs56356816
Chromosome Location	chr15:93125126-93125127
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM174B-2	chr15:93114431-93127864	XLOC_011584

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16947074	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16947087	1.00[EUR][1000 genomes]
rs28607954	1.00[EUR][1000 genomes]
rs56411549	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60198063	1.00[EUR][1000 genomes]
rs60202325	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60773454	1.00[EUR][1000 genomes]
rs61648904	1.00[EUR][1000 genomes]
rs73452882	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73452888	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73454733	1.00[EUR][1000 genomes]
rs73531783	1.00[EUR][1000 genomes]
rs74029102	1.00[EUR][1000 genomes]
rs74029103	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029116	1.00[EUR][1000 genomes]
rs74029127	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029128	1.00[EUR][1000 genomes]
rs74029129	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029130	1.00[EUR][1000 genomes]
rs74029131	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029132	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029133	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029134	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029135	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029136	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029137	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029141	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029146	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029147	1.00[EUR][1000 genomes]
rs74029148	1.00[EUR][1000 genomes]
rs74029149	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029150	1.00[EUR][1000 genomes]
rs74029153	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74031608	1.00[EUR][1000 genomes]
rs74031611	1.00[EUR][1000 genomes]
rs74031613	1.00[EUR][1000 genomes]
rs74031614	1.00[EUR][1000 genomes]
rs74031617	1.00[EUR][1000 genomes]
rs74031618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv457249	chr15:93116519-93133425	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv570503	chr15:93116519-93133425	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93106000-93125800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93113800-93134400	Weak transcription	Right Atrium	heart
3	chr15:93121600-93125600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:93123000-93127600	Weak transcription	Right Ventricle	heart
5	chr15:93124400-93125400	Weak transcription	Fetal Muscle Leg	muscle

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