Variant report

Variant	rs28626651
Chromosome Location	chr13:30982093-30982094
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:30981012..30985538-chr13:31190181..31193440,4	MCF-7	breast:
2	chr13:30981599..30985158-chr13:30990807..30993818,4	K562	blood:
3	chr13:30980856..30984356-chr13:30993151..30996780,5	MCF-7	breast:
4	chr13:30981732..30982540-chr13:31376786..31377668,2	MCF-7	breast:
5	chr13:30980292..30984261-chr13:31037383..31040522,8	MCF-7	breast:
6	chr13:30965372..30967772-chr13:30980915..30983340,2	K562	blood:
7	chr13:30981636..30984379-chr13:31031464..31034807,3	K562	blood:
8	chr13:30981276..30984149-chr13:30995359..30999580,6	MCF-7	breast:
9	chr13:30968958..30971854-chr13:30981722..30984094,2	MCF-7	breast:
10	chr13:30972183..30974751-chr13:30980009..30982841,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000132952	Chromatin interaction
ENSG00000189403	Chromatin interaction
ENSG00000225039	Chromatin interaction
ENSG00000237879	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17074595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35109193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56310320	1.00[EUR][1000 genomes]
rs61218246	1.00[EUR][1000 genomes]
rs73443656	1.00[EUR][1000 genomes]
rs73443658	1.00[EUR][1000 genomes]
rs73445867	1.00[EUR][1000 genomes]
rs73445892	1.00[EUR][1000 genomes]
rs74043098	1.00[EUR][1000 genomes]
rs74046004	1.00[EUR][1000 genomes]
rs74046005	1.00[EUR][1000 genomes]
rs74046008	1.00[EUR][1000 genomes]
rs74046013	1.00[EUR][1000 genomes]
rs846485	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30970000-30982200	Weak transcription	Esophagus	oesophagus
2	chr13:30970200-30982200	Weak transcription	Psoas Muscle	Psoas
3	chr13:30970600-30982200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:30973400-30982200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr13:30976400-30982200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:30976400-30982800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:30978000-30982200	Weak transcription	K562	blood
8	chr13:30979000-30982200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:30979000-30982200	Weak transcription	HMEC	breast
10	chr13:30979000-30983000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:30979400-30982200	Enhancers	Fetal Thymus	thymus
12	chr13:30979400-30982800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr13:30980000-30982200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr13:30980000-30982200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr13:30980200-30982200	Weak transcription	Brain Germinal Matrix	brain
16	chr13:30980200-30982200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr13:30980200-30982200	Weak transcription	Fetal Kidney	kidney
18	chr13:30980400-30982200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:30980400-30982200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr13:30980400-30982200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:30980400-30982200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:30980400-30982200	Weak transcription	Liver	Liver
23	chr13:30980400-30982200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr13:30980400-30982200	Weak transcription	NHEK	skin
25	chr13:30980600-30982200	Weak transcription	Right Atrium	heart
26	chr13:30981000-30982200	Enhancers	Primary B cells from peripheral blood	blood
27	chr13:30981000-30982200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr13:30981000-30982400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr13:30981200-30982200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr13:30981200-30982200	Weak transcription	Fetal Intestine Small	intestine
31	chr13:30981400-30982200	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr13:30981400-30982200	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr13:30981400-30982200	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr13:30981400-30982200	Enhancers	Thymus	Thymus
35	chr13:30981400-30983200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr13:30981400-30983600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr13:30981600-30982200	Enhancers	Primary B cells from cord blood	blood
38	chr13:30981600-30982200	Enhancers	Adipose Nuclei	Adipose
39	chr13:30981600-30984000	Enhancers	Primary T cells from cord blood	blood
40	chr13:30981800-30982200	Enhancers	Primary T cells fromperipheralblood	blood
41	chr13:30981800-30983200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr13:30982000-30982200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr13:30982000-30982200	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr13:30982000-30982200	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr13:30982000-30982200	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr13:30982000-30982200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr13:30982000-30982200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr13:30982000-30982200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:30982000-30982200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr13:30982000-30982200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links