Variant report

Variant	rs74043098
Chromosome Location	chr13:30956917-30956918
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30953052..30955513-chr13:30956447..30958351,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11839654	1.00[EUR][1000 genomes]
rs17074595	1.00[EUR][1000 genomes]
rs28626651	1.00[EUR][1000 genomes]
rs35109193	1.00[EUR][1000 genomes]
rs56310320	1.00[EUR][1000 genomes]
rs61218246	1.00[EUR][1000 genomes]
rs73443628	1.00[EUR][1000 genomes]
rs73443656	1.00[EUR][1000 genomes]
rs73443658	1.00[EUR][1000 genomes]
rs73445867	1.00[EUR][1000 genomes]
rs73445892	1.00[EUR][1000 genomes]
rs74043099	1.00[AMR][1000 genomes]
rs74043100	1.00[AMR][1000 genomes]
rs74046004	1.00[EUR][1000 genomes]
rs74046005	1.00[EUR][1000 genomes]
rs74046008	1.00[EUR][1000 genomes]
rs74046013	1.00[EUR][1000 genomes]
rs846485	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30946600-30963600	Weak transcription	Fetal Intestine Large	intestine
2	chr13:30951400-30957000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:30951400-30969400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:30951600-30957000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr13:30951600-30964200	Weak transcription	Esophagus	oesophagus
6	chr13:30952400-30962000	Weak transcription	Primary B cells from cord blood	blood
7	chr13:30952600-30957000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr13:30952600-30957000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr13:30952600-30957000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr13:30953600-30957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr13:30953600-30957000	Weak transcription	Thymus	Thymus
12	chr13:30954000-30957000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr13:30954200-30957000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr13:30955600-30963200	Enhancers	Fetal Thymus	thymus
15	chr13:30955800-30957600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr13:30955800-30958000	Enhancers	Primary T cells from cord blood	blood
17	chr13:30956000-30957000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr13:30956000-30957000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr13:30956000-30957800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr13:30956200-30957000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr13:30956200-30957200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:30956200-30958400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr13:30956600-30957000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:30956800-30957400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr13:30956800-30957400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr13:30956800-30958000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr13:30956800-30958000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr13:30956800-30958000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr13:30956800-30958000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr13:30956800-30959600	Enhancers	Dnd41	blood

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