Variant report

Variant	rs73445892
Chromosome Location	chr13:30941537-30941538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KATNAL1-3	chr13:30941106-30941854	XLOC_010556

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11839654	1.00[EUR][1000 genomes]
rs17074595	1.00[EUR][1000 genomes]
rs28626651	1.00[EUR][1000 genomes]
rs35109193	1.00[EUR][1000 genomes]
rs56310320	1.00[EUR][1000 genomes]
rs61218246	1.00[EUR][1000 genomes]
rs73443628	1.00[EUR][1000 genomes]
rs73443656	1.00[EUR][1000 genomes]
rs73443658	1.00[EUR][1000 genomes]
rs73445867	1.00[EUR][1000 genomes]
rs74043098	1.00[EUR][1000 genomes]
rs74046004	1.00[EUR][1000 genomes]
rs74046005	1.00[EUR][1000 genomes]
rs74046008	1.00[EUR][1000 genomes]
rs74046013	1.00[EUR][1000 genomes]
rs846485	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv455853	chr13:30911531-30951514	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv561394	chr13:30911531-30951514	Enhancers Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30929400-30944400	Weak transcription	GM12878-XiMat	blood
2	chr13:30929600-30942800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr13:30930000-30942800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr13:30930400-30942600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr13:30930400-30942800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr13:30930600-30942800	Weak transcription	Primary T cells from cord blood	blood
7	chr13:30930600-30942800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr13:30934200-30942000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr13:30934800-30944200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr13:30935800-30944200	Weak transcription	Spleen	Spleen
11	chr13:30936400-30942000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr13:30937400-30941800	Weak transcription	Placenta	Placenta
13	chr13:30938200-30946200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:30938400-30945400	Weak transcription	Adipose Nuclei	Adipose
15	chr13:30938600-30944200	Weak transcription	Gastric	stomach
16	chr13:30939000-30943000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr13:30939200-30945800	Weak transcription	K562	blood
18	chr13:30939600-30941800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr13:30939800-30941800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:30939800-30944400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:30939800-30945000	Weak transcription	Right Atrium	heart
22	chr13:30939800-30945800	Weak transcription	Osteobl	bone
23	chr13:30939800-30947800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr13:30940000-30945600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:30940000-30950600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr13:30940400-30942800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr13:30940400-30952400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:30940600-30942000	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr13:30940600-30942400	Strong transcription	Dnd41	blood
30	chr13:30940600-30942800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr13:30940600-30945600	Weak transcription	HUVEC	blood vessel
32	chr13:30940800-30942000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr13:30940800-30942400	Weak transcription	Primary B cells from cord blood	blood
34	chr13:30940800-30945600	Weak transcription	Fetal Muscle Leg	muscle
35	chr13:30941000-30942400	Strong transcription	Primary B cells from peripheral blood	blood
36	chr13:30941000-30942400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr13:30941000-30942600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr13:30941000-30942600	Strong transcription	Fetal Thymus	thymus
39	chr13:30941000-30942800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr13:30941000-30942800	Strong transcription	Thymus	Thymus
41	chr13:30941000-30944800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr13:30941200-30941600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr13:30941200-30941800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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