Variant report

Variant	rs73445867
Chromosome Location	chr13:30937473-30937474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30934411..30938096-chr13:30938941..30941537,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KATNAL1-3	chr13:30937298-30937513	XLOC_010556

Variant related genes	Relation type
ENSG00000238121	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11839654	1.00[EUR][1000 genomes]
rs17074595	1.00[EUR][1000 genomes]
rs28626651	1.00[EUR][1000 genomes]
rs35109193	1.00[EUR][1000 genomes]
rs56310320	1.00[EUR][1000 genomes]
rs61218246	1.00[EUR][1000 genomes]
rs73443628	1.00[EUR][1000 genomes]
rs73443656	1.00[EUR][1000 genomes]
rs73443658	1.00[EUR][1000 genomes]
rs73445892	1.00[EUR][1000 genomes]
rs74043098	1.00[EUR][1000 genomes]
rs74046004	1.00[EUR][1000 genomes]
rs74046005	1.00[EUR][1000 genomes]
rs74046008	1.00[EUR][1000 genomes]
rs74046013	1.00[EUR][1000 genomes]
rs846485	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv455853	chr13:30911531-30951514	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv561394	chr13:30911531-30951514	Enhancers Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30922200-30937800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr13:30924600-30940000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr13:30927800-30939600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr13:30929200-30938000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr13:30929400-30938000	Weak transcription	Gastric	stomach
6	chr13:30929400-30944400	Weak transcription	GM12878-XiMat	blood
7	chr13:30929600-30942800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr13:30929800-30938200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:30930000-30942800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr13:30930200-30939200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:30930200-30939600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr13:30930400-30938000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr13:30930400-30942600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr13:30930400-30942800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr13:30930600-30937800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:30930600-30938200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr13:30930600-30938800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr13:30930600-30942800	Weak transcription	Primary T cells from cord blood	blood
19	chr13:30930600-30942800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr13:30930800-30938400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr13:30930800-30940000	Strong transcription	Thymus	Thymus
22	chr13:30934200-30942000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr13:30934400-30938400	Enhancers	Adipose Nuclei	Adipose
24	chr13:30934800-30944200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr13:30935400-30937800	Weak transcription	Left Ventricle	heart
26	chr13:30935400-30938200	Weak transcription	Fetal Heart	heart
27	chr13:30935400-30938800	Weak transcription	Right Atrium	heart
28	chr13:30935800-30944200	Weak transcription	Spleen	Spleen
29	chr13:30936000-30938400	Strong transcription	Primary B cells from peripheral blood	blood
30	chr13:30936000-30939000	Enhancers	Liver	Liver
31	chr13:30936200-30938000	Enhancers	Fetal Brain Male	brain
32	chr13:30936200-30938800	Enhancers	HUVEC	blood vessel
33	chr13:30936400-30937800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr13:30936400-30939800	Enhancers	Fetal Muscle Leg	muscle
35	chr13:30936400-30942000	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr13:30936600-30938400	Weak transcription	Fetal Stomach	stomach
37	chr13:30936800-30937600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr13:30936800-30938000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr13:30936800-30938000	Enhancers	HSMMtube	muscle
40	chr13:30936800-30939800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr13:30937000-30938000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr13:30937000-30938400	Weak transcription	NHDF-Ad	bronchial
43	chr13:30937000-30938600	Strong transcription	Primary B cells from cord blood	blood
44	chr13:30937000-30940400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr13:30937200-30938400	Strong transcription	Fetal Thymus	thymus
46	chr13:30937200-30938400	Weak transcription	Dnd41	blood
47	chr13:30937200-30938800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr13:30937200-30940400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr13:30937400-30937800	Weak transcription	HepG2	liver
50	chr13:30937400-30938000	Enhancers	K562	blood

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