Variant report

Variant	rs846485
Chromosome Location	chr13:30823128-30823129
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11839654	1.00[EUR][1000 genomes]
rs17074595	1.00[EUR][1000 genomes]
rs28626651	1.00[EUR][1000 genomes]
rs35109193	1.00[EUR][1000 genomes]
rs56310320	1.00[EUR][1000 genomes]
rs61218246	1.00[EUR][1000 genomes]
rs73443628	1.00[EUR][1000 genomes]
rs73443656	1.00[EUR][1000 genomes]
rs73443658	1.00[EUR][1000 genomes]
rs73445867	1.00[EUR][1000 genomes]
rs73445892	1.00[EUR][1000 genomes]
rs74043098	1.00[EUR][1000 genomes]
rs74046004	1.00[EUR][1000 genomes]
rs74046005	1.00[EUR][1000 genomes]
rs74046008	1.00[EUR][1000 genomes]
rs74046013	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30791000-30831400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:30796800-30831400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:30797000-30823400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:30799200-30831400	Weak transcription	Aorta	Aorta
5	chr13:30799400-30823200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:30799400-30831600	Weak transcription	Right Ventricle	heart
7	chr13:30799600-30823400	Weak transcription	A549	lung
8	chr13:30799600-30823400	Weak transcription	NHEK	skin
9	chr13:30799600-30845200	Weak transcription	HMEC	breast
10	chr13:30803000-30831400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr13:30803400-30827800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr13:30803600-30830400	Weak transcription	Fetal Heart	heart
13	chr13:30803600-30831400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr13:30803800-30823200	Weak transcription	Fetal Intestine Large	intestine
15	chr13:30804400-30831600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr13:30804800-30823400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr13:30805600-30823200	Weak transcription	Liver	Liver
18	chr13:30805600-30823400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr13:30805600-30823400	Weak transcription	Fetal Brain Female	brain
20	chr13:30805600-30823400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr13:30805600-30831600	Weak transcription	Left Ventricle	heart
22	chr13:30805600-30831600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr13:30805600-30841800	Weak transcription	Ovary	ovary
24	chr13:30805600-30853200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr13:30808200-30823400	Weak transcription	Fetal Lung	lung
26	chr13:30809000-30823400	Weak transcription	Brain Substantia Nigra	brain
27	chr13:30809400-30823200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr13:30809400-30823400	Weak transcription	Brain Hippocampus Middle	brain
29	chr13:30809800-30823200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr13:30810000-30823200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:30810000-30831600	Weak transcription	NHLF	lung
32	chr13:30810600-30823200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr13:30810600-30849200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr13:30811000-30823600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr13:30812400-30823200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr13:30813000-30823200	Weak transcription	Thymus	Thymus
37	chr13:30813000-30823400	Weak transcription	Fetal Kidney	kidney
38	chr13:30813000-30823400	Weak transcription	HSMM	muscle
39	chr13:30813000-30827800	Weak transcription	HUVEC	blood vessel
40	chr13:30813000-30849000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr13:30814600-30823400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr13:30814800-30823200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr13:30814800-30831400	Weak transcription	NH-A	brain
44	chr13:30815000-30823400	Weak transcription	Primary B cells from cord blood	blood
45	chr13:30815200-30823200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr13:30815200-30823400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:30815200-30823400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr13:30815800-30823400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr13:30816000-30823800	Weak transcription	NHDF-Ad	bronchial
50	chr13:30816000-30827800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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