Variant report

Variant	rs56310320
Chromosome Location	chr13:30975120-30975121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30973459..30976189-chr13:31190039..31192410,2	MCF-7	breast:
2	chr13:30970632..30975368-chr13:30976139..30980385,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132952	Chromatin interaction
ENSG00000189403	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11839654	1.00[EUR][1000 genomes]
rs17074595	1.00[EUR][1000 genomes]
rs28626651	1.00[EUR][1000 genomes]
rs35109193	1.00[EUR][1000 genomes]
rs55923400	1.00[AMR][1000 genomes]
rs611896	1.00[AMR][1000 genomes]
rs61218246	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73443628	1.00[EUR][1000 genomes]
rs73443656	1.00[EUR][1000 genomes]
rs73443658	1.00[EUR][1000 genomes]
rs73445867	1.00[EUR][1000 genomes]
rs73445892	1.00[EUR][1000 genomes]
rs74043098	1.00[EUR][1000 genomes]
rs74046004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74046005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74046008	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74046013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74046016	1.00[AMR][1000 genomes]
rs846485	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30970000-30976000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:30970000-30982200	Weak transcription	Esophagus	oesophagus
3	chr13:30970200-30976400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr13:30970200-30982200	Weak transcription	Psoas Muscle	Psoas
5	chr13:30970600-30982200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:30970800-30975200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:30970800-30975400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:30970800-30975400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:30970800-30975800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr13:30970800-30975800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr13:30970800-30978400	Weak transcription	Fetal Kidney	kidney
12	chr13:30970800-30982000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr13:30973000-30981400	Weak transcription	Thymus	Thymus
14	chr13:30973200-30979600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr13:30973400-30977200	Weak transcription	Fetal Thymus	thymus
16	chr13:30973400-30977600	Weak transcription	Adipose Nuclei	Adipose
17	chr13:30973400-30982200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr13:30973600-30978000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:30973600-30978200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:30975000-30977800	Weak transcription	Liver	Liver
21	chr13:30975000-30979800	Weak transcription	Fetal Intestine Small	intestine

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