The 2.0 version of rSNPBase

Variant report

Variant rs28716057
Chromosome Location chr4:125611392-125611393
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:125592400-125611400 Weak transcription HepG2 liver
2 chr4:125593000-125618200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr4:125593000-125621800 Weak transcription Fetal Stomach stomach
4 chr4:125593000-125631200 Weak transcription Esophagus oesophagus
5 chr4:125593400-125621800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr4:125593400-125629800 Weak transcription Aorta Aorta
7 chr4:125593400-125629800 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr4:125593400-125631200 Weak transcription Thymus Thymus
9 chr4:125593600-125617400 Weak transcription Fetal Intestine Large intestine
10 chr4:125593600-125629600 Weak transcription HSMMtube muscle
11 chr4:125593600-125631000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr4:125594200-125625400 Weak transcription Hela-S3 cervix
13 chr4:125594200-125631200 Weak transcription Fetal Thymus thymus
14 chr4:125594600-125616600 Weak transcription A549 lung
15 chr4:125597400-125631200 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr4:125599200-125627800 Weak transcription Placenta Placenta
17 chr4:125600000-125618000 Weak transcription NHDF-Ad bronchial
18 chr4:125600000-125618200 Weak transcription Dnd41 blood
19 chr4:125600000-125618600 Weak transcription Fetal Brain Female brain
20 chr4:125600200-125613600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr4:125600200-125616600 Weak transcription Adipose Nuclei Adipose
22 chr4:125601000-125612800 Weak transcription Monocytes-CD14+_RO01746 blood
23 chr4:125601200-125612800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr4:125601200-125617000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr4:125601600-125621200 Weak transcription Fetal Heart heart
26 chr4:125606000-125624400 Weak transcription Fetal Brain Male brain
27 chr4:125606000-125631000 Weak transcription Placenta Amnion Placenta Amnion
28 chr4:125606200-125629600 Weak transcription K562 blood
29 chr4:125606400-125615600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr4:125606400-125615800 Weak transcription Rectal Smooth Muscle rectum
31 chr4:125606400-125621800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr4:125607800-125615800 Weak transcription Ovary ovary
33 chr4:125607800-125621200 Weak transcription NH-A brain
34 chr4:125607800-125631200 Weak transcription Left Ventricle heart
35 chr4:125608000-125612800 Weak transcription NHEK skin
36 chr4:125608000-125615600 Weak transcription H9 Cell Line embryonic stem cell
37 chr4:125608000-125616400 Weak transcription H1 Cell Line embryonic stem cell
38 chr4:125608000-125618600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr4:125608000-125621200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr4:125608200-125611400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr4:125608200-125618200 Weak transcription HMEC breast
42 chr4:125608200-125621800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr4:125608200-125629800 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr4:125608400-125613800 Weak transcription iPS-15b Cell Line embryonic stem cell
45 chr4:125608400-125618600 Weak transcription Primary monocytes fromperipheralblood blood
46 chr4:125608400-125621400 Weak transcription Muscle Satellite Cultured Cells --
47 chr4:125608600-125615600 Weak transcription iPS-18 Cell Line embryonic stem cell
48 chr4:125608800-125617600 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr4:125609000-125611800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr4:125609000-125611800 Strong transcription Fetal Lung lung

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Last update: Aug 31, 2015