Variant report

Variant	rs4410542
Chromosome Location	chr4:125608308-125608309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125607408..125609812-chr4:125634396..125636485,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10026096	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13434506	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13435256	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008483	1.00[ASN][1000 genomes]
rs17008494	0.85[AFR][1000 genomes]
rs17008497	1.00[ASN][1000 genomes]
rs2055274	1.00[ASN][1000 genomes]
rs28446748	0.87[ASN][1000 genomes]
rs28570281	0.87[ASN][1000 genomes]
rs28593722	0.87[ASN][1000 genomes]
rs28607416	0.90[AFR][1000 genomes]
rs28609408	0.95[AFR][1000 genomes]
rs28622220	0.85[AFR][1000 genomes]
rs28691726	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28716057	0.95[AFR][1000 genomes]
rs28815787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2893092	1.00[ASN][1000 genomes]
rs3733472	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72925412	0.87[ASN][1000 genomes]
rs72925417	0.87[ASN][1000 genomes]
rs72925427	1.00[ASN][1000 genomes]
rs72925486	1.00[ASN][1000 genomes]
rs72925494	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72925502	1.00[ASN][1000 genomes]
rs72927437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs870741	0.87[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125592400-125611400	Weak transcription	HepG2	liver
2	chr4:125593000-125608400	Weak transcription	Pancreas	Pancrea
3	chr4:125593000-125618200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:125593000-125621800	Weak transcription	Fetal Stomach	stomach
5	chr4:125593000-125631200	Weak transcription	Esophagus	oesophagus
6	chr4:125593200-125608800	Weak transcription	Colonic Mucosa	Colon
7	chr4:125593200-125609000	Weak transcription	Brain Germinal Matrix	brain
8	chr4:125593400-125621800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:125593400-125629800	Weak transcription	Aorta	Aorta
10	chr4:125593400-125629800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:125593400-125631200	Weak transcription	Thymus	Thymus
12	chr4:125593600-125609800	Weak transcription	Fetal Kidney	kidney
13	chr4:125593600-125610400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:125593600-125617400	Weak transcription	Fetal Intestine Large	intestine
15	chr4:125593600-125629600	Weak transcription	HSMMtube	muscle
16	chr4:125593600-125631000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:125593800-125610200	Weak transcription	Primary T cells from cord blood	blood
18	chr4:125594200-125625400	Weak transcription	Hela-S3	cervix
19	chr4:125594200-125631200	Weak transcription	Fetal Thymus	thymus
20	chr4:125594600-125616600	Weak transcription	A549	lung
21	chr4:125596000-125609800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr4:125597400-125631200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:125599200-125627800	Weak transcription	Placenta	Placenta
24	chr4:125599600-125609000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:125600000-125609000	Weak transcription	Fetal Lung	lung
26	chr4:125600000-125609000	Weak transcription	HSMM	muscle
27	chr4:125600000-125609200	Weak transcription	Osteobl	bone
28	chr4:125600000-125618000	Weak transcription	NHDF-Ad	bronchial
29	chr4:125600000-125618200	Weak transcription	Dnd41	blood
30	chr4:125600000-125618600	Weak transcription	Fetal Brain Female	brain
31	chr4:125600200-125613600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:125600200-125616600	Weak transcription	Adipose Nuclei	Adipose
33	chr4:125600600-125609000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:125601000-125612800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr4:125601200-125612800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:125601200-125617000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:125601600-125621200	Weak transcription	Fetal Heart	heart
38	chr4:125605000-125609200	Enhancers	HUVEC	blood vessel
39	chr4:125605200-125608600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr4:125605600-125608400	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr4:125606000-125608600	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr4:125606000-125624400	Weak transcription	Fetal Brain Male	brain
43	chr4:125606000-125631000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr4:125606200-125608400	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr4:125606200-125629600	Weak transcription	K562	blood
46	chr4:125606400-125608800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr4:125606400-125609000	Weak transcription	Fetal Muscle Leg	muscle
48	chr4:125606400-125615600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr4:125606400-125615800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr4:125606400-125621800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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