Variant report

Variant	rs72925417
Chromosome Location	chr4:125558161-125558162
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125556864..125559045-chr4:125577964..125580279,2	K562	blood:
2	chr4:125556505..125558732-chr4:125559771..125561387,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10026000	0.80[AFR][1000 genomes]
rs10026096	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13434506	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13435256	0.87[ASN][1000 genomes]
rs17008483	0.87[ASN][1000 genomes]
rs17008497	0.87[ASN][1000 genomes]
rs2055274	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28446748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28570281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28593722	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28691726	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2893092	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3733472	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4410542	0.87[ASN][1000 genomes]
rs72925412	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72925427	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72925486	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72925494	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72925502	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72927437	0.87[ASN][1000 genomes]
rs870741	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307542	0.80[AFR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125539000-125561200	Weak transcription	Ovary	ovary
2	chr4:125539200-125572400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:125540000-125590200	Weak transcription	Aorta	Aorta
4	chr4:125543600-125584200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:125545000-125572400	Weak transcription	Left Ventricle	heart
6	chr4:125547000-125571400	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:125552400-125558800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:125553200-125560200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:125553400-125561000	Weak transcription	NHLF	lung
10	chr4:125553400-125563000	Weak transcription	HSMM	muscle
11	chr4:125553400-125566000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:125553400-125590200	Weak transcription	HSMMtube	muscle
13	chr4:125553600-125561000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:125553600-125561200	Weak transcription	NH-A	brain
15	chr4:125553600-125561200	Weak transcription	Osteobl	bone
16	chr4:125553600-125564000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:125553600-125587600	Weak transcription	Adipose Nuclei	Adipose
18	chr4:125553800-125565800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:125554000-125558200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:125554000-125558600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr4:125554000-125565800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:125554000-125572000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:125554000-125591600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr4:125554600-125558800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr4:125554800-125591200	Weak transcription	Fetal Kidney	kidney
26	chr4:125555200-125560800	Weak transcription	Hela-S3	cervix
27	chr4:125555200-125561400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:125555200-125563200	Weak transcription	Fetal Lung	lung
29	chr4:125555400-125560800	Weak transcription	NHEK	skin
30	chr4:125555400-125563800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr4:125555400-125586800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:125555800-125558600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:125555800-125559400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr4:125556000-125559000	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr4:125556800-125558200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:125556800-125591200	Weak transcription	Esophagus	oesophagus
37	chr4:125557000-125558400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr4:125557400-125558400	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr4:125557400-125558600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:125557800-125558200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:125557800-125558200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:125557800-125558200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:125557800-125558400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr4:125557800-125558600	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr4:125557800-125558600	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr4:125557800-125558800	Strong transcription	HUVEC	blood vessel

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