Variant report

Variant	rs72927437
Chromosome Location	chr4:125614182-125614183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125612285..125614855-chr4:125632968..125636424,3	K562	blood:
2	chr4:125610773..125614262-chr4:125630739..125634696,4	K562	blood:
3	chr4:125614012..125616210-chr4:125633150..125635915,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10026096	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13434506	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13435256	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008483	1.00[ASN][1000 genomes]
rs17008494	0.85[AFR][1000 genomes]
rs17008497	1.00[ASN][1000 genomes]
rs2055274	1.00[ASN][1000 genomes]
rs28446748	0.87[ASN][1000 genomes]
rs28570281	0.87[ASN][1000 genomes]
rs28593722	0.87[ASN][1000 genomes]
rs28607416	0.90[AFR][1000 genomes]
rs28609408	0.95[AFR][1000 genomes]
rs28622220	0.85[AFR][1000 genomes]
rs28691726	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28716057	0.95[AFR][1000 genomes]
rs28815787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2893092	1.00[ASN][1000 genomes]
rs3733472	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4410542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72925412	0.87[ASN][1000 genomes]
rs72925417	0.87[ASN][1000 genomes]
rs72925427	1.00[ASN][1000 genomes]
rs72925486	1.00[ASN][1000 genomes]
rs72925494	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72925502	1.00[ASN][1000 genomes]
rs870741	0.87[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125593000-125618200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:125593000-125621800	Weak transcription	Fetal Stomach	stomach
3	chr4:125593000-125631200	Weak transcription	Esophagus	oesophagus
4	chr4:125593400-125621800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:125593400-125629800	Weak transcription	Aorta	Aorta
6	chr4:125593400-125629800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:125593400-125631200	Weak transcription	Thymus	Thymus
8	chr4:125593600-125617400	Weak transcription	Fetal Intestine Large	intestine
9	chr4:125593600-125629600	Weak transcription	HSMMtube	muscle
10	chr4:125593600-125631000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:125594200-125625400	Weak transcription	Hela-S3	cervix
12	chr4:125594200-125631200	Weak transcription	Fetal Thymus	thymus
13	chr4:125594600-125616600	Weak transcription	A549	lung
14	chr4:125597400-125631200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:125599200-125627800	Weak transcription	Placenta	Placenta
16	chr4:125600000-125618000	Weak transcription	NHDF-Ad	bronchial
17	chr4:125600000-125618200	Weak transcription	Dnd41	blood
18	chr4:125600000-125618600	Weak transcription	Fetal Brain Female	brain
19	chr4:125600200-125616600	Weak transcription	Adipose Nuclei	Adipose
20	chr4:125601200-125617000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:125601600-125621200	Weak transcription	Fetal Heart	heart
22	chr4:125606000-125624400	Weak transcription	Fetal Brain Male	brain
23	chr4:125606000-125631000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr4:125606200-125629600	Weak transcription	K562	blood
25	chr4:125606400-125615600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr4:125606400-125615800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr4:125606400-125621800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:125607800-125615800	Weak transcription	Ovary	ovary
29	chr4:125607800-125621200	Weak transcription	NH-A	brain
30	chr4:125607800-125631200	Weak transcription	Left Ventricle	heart
31	chr4:125608000-125615600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr4:125608000-125616400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:125608000-125618600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:125608000-125621200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:125608200-125618200	Weak transcription	HMEC	breast
36	chr4:125608200-125621800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:125608200-125629800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr4:125608400-125618600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr4:125608400-125621400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr4:125608600-125615600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr4:125608800-125617600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr4:125609400-125616400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr4:125609600-125614800	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr4:125609600-125618600	Weak transcription	Brain Germinal Matrix	brain
45	chr4:125609800-125617400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr4:125610600-125621200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr4:125610800-125614400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:125610800-125616400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr4:125611000-125616400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:125611000-125618400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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