Variant report

Variant	rs28691726
Chromosome Location	chr4:125604865-125604866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10026096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13434506	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13435256	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17008483	0.88[ASN][1000 genomes]
rs17008494	0.81[AFR][1000 genomes]
rs17008497	0.88[ASN][1000 genomes]
rs2055274	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28446748	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28570281	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28593722	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28607416	0.86[AFR][1000 genomes]
rs28609408	0.91[AFR][1000 genomes]
rs28622220	0.81[AFR][1000 genomes]
rs28716057	0.91[AFR][1000 genomes]
rs28815787	0.95[AFR][1000 genomes]
rs2893092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3733472	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4410542	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72925412	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72925417	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72925427	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72925486	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72925494	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72925502	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72927437	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs870741	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125590600-125605600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:125592400-125611400	Weak transcription	HepG2	liver
3	chr4:125593000-125605600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:125593000-125606200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:125593000-125608400	Weak transcription	Pancreas	Pancrea
6	chr4:125593000-125618200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:125593000-125621800	Weak transcription	Fetal Stomach	stomach
8	chr4:125593000-125631200	Weak transcription	Esophagus	oesophagus
9	chr4:125593200-125605600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:125593200-125606000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:125593200-125607400	Weak transcription	Gastric	stomach
12	chr4:125593200-125607800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:125593200-125608800	Weak transcription	Colonic Mucosa	Colon
14	chr4:125593200-125609000	Weak transcription	Brain Germinal Matrix	brain
15	chr4:125593400-125605200	Weak transcription	Fetal Brain Male	brain
16	chr4:125593400-125605600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:125593400-125605600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:125593400-125605600	Weak transcription	K562	blood
19	chr4:125593400-125606800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:125593400-125607400	Weak transcription	Lung	lung
21	chr4:125593400-125621800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:125593400-125629800	Weak transcription	Aorta	Aorta
23	chr4:125593400-125629800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:125593400-125631200	Weak transcription	Thymus	Thymus
25	chr4:125593600-125605400	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:125593600-125605600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr4:125593600-125605600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:125593600-125606000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr4:125593600-125606000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr4:125593600-125606200	Weak transcription	Left Ventricle	heart
31	chr4:125593600-125607000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:125593600-125607600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr4:125593600-125609800	Weak transcription	Fetal Kidney	kidney
34	chr4:125593600-125610400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr4:125593600-125617400	Weak transcription	Fetal Intestine Large	intestine
36	chr4:125593600-125629600	Weak transcription	HSMMtube	muscle
37	chr4:125593600-125631000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:125593800-125606000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:125593800-125610200	Weak transcription	Primary T cells from cord blood	blood
40	chr4:125594200-125625400	Weak transcription	Hela-S3	cervix
41	chr4:125594200-125631200	Weak transcription	Fetal Thymus	thymus
42	chr4:125594600-125616600	Weak transcription	A549	lung
43	chr4:125594800-125605200	Weak transcription	NHEK	skin
44	chr4:125594800-125605800	Weak transcription	Brain Hippocampus Middle	brain
45	chr4:125596000-125609800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr4:125597400-125631200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr4:125599200-125605600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:125599200-125627800	Weak transcription	Placenta	Placenta
49	chr4:125599400-125607400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr4:125599600-125609000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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