Variant report

Variant	rs28898887
Chromosome Location	chr18:43320889-43320890
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11873365	1.00[EUR][1000 genomes]
rs11875230	1.00[EUR][1000 genomes]
rs11877436	1.00[EUR][1000 genomes]
rs16978476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16978492	1.00[EUR][1000 genomes]
rs16978493	1.00[EUR][1000 genomes]
rs16978494	1.00[EUR][1000 genomes]
rs28438661	1.00[EUR][1000 genomes]
rs28450604	1.00[EUR][1000 genomes]
rs28460769	1.00[EUR][1000 genomes]
rs28461979	1.00[EUR][1000 genomes]
rs28483450	1.00[EUR][1000 genomes]
rs28605020	1.00[EUR][1000 genomes]
rs28669237	1.00[EUR][1000 genomes]
rs28698347	1.00[EUR][1000 genomes]
rs28757795	1.00[EUR][1000 genomes]
rs28898876	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28898881	1.00[EUR][1000 genomes]
rs28898882	1.00[EUR][1000 genomes]
rs28898895	1.00[EUR][1000 genomes]
rs28994273	1.00[EUR][1000 genomes]
rs28994285	1.00[EUR][1000 genomes]
rs28994287	1.00[EUR][1000 genomes]
rs28994295	1.00[EUR][1000 genomes]
rs34674177	1.00[EUR][1000 genomes]
rs515596	1.00[EUR][1000 genomes]
rs56193937	1.00[EUR][1000 genomes]
rs7228878	1.00[EUR][1000 genomes]
rs7236728	1.00[EUR][1000 genomes]
rs7242125	1.00[EUR][1000 genomes]
rs7243454	1.00[EUR][1000 genomes]
rs73953681	1.00[EUR][1000 genomes]
rs8084290	1.00[EUR][1000 genomes]
rs8089544	1.00[EUR][1000 genomes]
rs8089798	1.00[EUR][1000 genomes]
rs8090934	1.00[EUR][1000 genomes]
rs9946629	1.00[EUR][1000 genomes]
rs9946802	1.00[EUR][1000 genomes]
rs9947795	1.00[EUR][1000 genomes]
rs9948555	1.00[EUR][1000 genomes]
rs9948715	1.00[EUR][1000 genomes]
rs9951978	1.00[EUR][1000 genomes]
rs9953484	1.00[EUR][1000 genomes]
rs9954523	1.00[EUR][1000 genomes]
rs9955015	1.00[EUR][1000 genomes]
rs9957147	1.00[EUR][1000 genomes]
rs9957464	1.00[EUR][1000 genomes]
rs9957999	1.00[EUR][1000 genomes]
rs9958360	1.00[EUR][1000 genomes]
rs9958987	1.00[EUR][1000 genomes]
rs9959151	1.00[EUR][1000 genomes]
rs9959239	1.00[EUR][1000 genomes]
rs9960635	1.00[EUR][1000 genomes]
rs9961926	1.00[EUR][1000 genomes]
rs9964753	1.00[EUR][1000 genomes]
rs9964968	1.00[EUR][1000 genomes]
rs9965236	1.00[EUR][1000 genomes]
rs9965728	1.00[EUR][1000 genomes]
rs9966061	1.00[EUR][1000 genomes]
rs9967557	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525268	chr18:42748365-43474795	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv909587	chr18:43269125-43333526	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43290200-43323000	Weak transcription	Primary B cells from cord blood	blood
2	chr18:43296000-43325600	Weak transcription	Primary T cells from cord blood	blood
3	chr18:43305000-43331200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr18:43307400-43332200	Weak transcription	Brain Anterior Caudate	brain
5	chr18:43312400-43322400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr18:43312400-43325200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr18:43312800-43326000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr18:43312800-43335200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr18:43313000-43326000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr18:43318800-43321200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr18:43318800-43321600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr18:43319000-43325600	Weak transcription	NHDF-Ad	bronchial
13	chr18:43319200-43322200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr18:43319200-43325600	Strong transcription	Osteobl	bone
15	chr18:43319400-43322200	Active TSS	Left Ventricle	heart
16	chr18:43319400-43322200	Active TSS	Right Atrium	heart
17	chr18:43319600-43321200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr18:43320000-43329800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr18:43320200-43321200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr18:43320200-43322000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr18:43320200-43322400	Weak transcription	NHLF	lung
22	chr18:43320200-43325200	Weak transcription	Aorta	Aorta
23	chr18:43320200-43325200	Weak transcription	Pancreas	Pancrea
24	chr18:43320200-43325200	Weak transcription	Spleen	Spleen
25	chr18:43320200-43326000	Weak transcription	Right Ventricle	heart
26	chr18:43320200-43327000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr18:43320400-43321000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr18:43320400-43325200	Weak transcription	Fetal Heart	heart
29	chr18:43320800-43321000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr18:43320800-43321200	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr18:43320800-43321200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr18:43320800-43321200	Strong transcription	Brain Substantia Nigra	brain
33	chr18:43320800-43321200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
34	chr18:43320800-43325400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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