Variant report

Variant	rs9958987
Chromosome Location	chr18:43476804-43476805
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43470261..43474008-chr18:43474596..43477449,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11872710	1.00[EUR][1000 genomes]
rs11872746	1.00[EUR][1000 genomes]
rs11872802	1.00[EUR][1000 genomes]
rs11873365	1.00[EUR][1000 genomes]
rs11875230	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11877436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16978476	1.00[EUR][1000 genomes]
rs16978492	1.00[EUR][1000 genomes]
rs16978493	1.00[EUR][1000 genomes]
rs16978494	1.00[EUR][1000 genomes]
rs16978505	1.00[EUR][1000 genomes]
rs28366995	1.00[EUR][1000 genomes]
rs28372661	1.00[EUR][1000 genomes]
rs28438661	1.00[EUR][1000 genomes]
rs28450604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28460769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28461979	1.00[EUR][1000 genomes]
rs28479138	1.00[AMR][1000 genomes]
rs28483450	1.00[EUR][1000 genomes]
rs28504009	1.00[EUR][1000 genomes]
rs28563782	1.00[EUR][1000 genomes]
rs28605020	1.00[EUR][1000 genomes]
rs28669237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28698347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28757795	1.00[EUR][1000 genomes]
rs28898876	1.00[EUR][1000 genomes]
rs28898881	1.00[EUR][1000 genomes]
rs28898882	1.00[EUR][1000 genomes]
rs28898887	1.00[EUR][1000 genomes]
rs28898895	1.00[EUR][1000 genomes]
rs28994273	1.00[EUR][1000 genomes]
rs28994285	1.00[EUR][1000 genomes]
rs28994287	1.00[EUR][1000 genomes]
rs28994295	1.00[EUR][1000 genomes]
rs34674177	1.00[EUR][1000 genomes]
rs515596	1.00[EUR][1000 genomes]
rs56193937	1.00[EUR][1000 genomes]
rs7228878	1.00[EUR][1000 genomes]
rs7229410	1.00[EUR][1000 genomes]
rs7236728	1.00[EUR][1000 genomes]
rs7242125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7242434	1.00[AMR][1000 genomes]
rs7243454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73953681	1.00[EUR][1000 genomes]
rs8084290	1.00[EUR][1000 genomes]
rs8089544	1.00[EUR][1000 genomes]
rs8089798	1.00[EUR][1000 genomes]
rs8089860	1.00[EUR][1000 genomes]
rs8090934	1.00[EUR][1000 genomes]
rs8094456	1.00[EUR][1000 genomes]
rs9946629	1.00[EUR][1000 genomes]
rs9946802	1.00[EUR][1000 genomes]
rs9947795	1.00[EUR][1000 genomes]
rs9948555	1.00[EUR][1000 genomes]
rs9948715	1.00[EUR][1000 genomes]
rs9951978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9953484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9954523	1.00[EUR][1000 genomes]
rs9955015	1.00[EUR][1000 genomes]
rs9957147	1.00[EUR][1000 genomes]
rs9957464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9957999	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9958360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9959151	1.00[EUR][1000 genomes]
rs9959239	1.00[EUR][1000 genomes]
rs9960635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9961926	1.00[EUR][1000 genomes]
rs9964753	1.00[EUR][1000 genomes]
rs9964968	1.00[EUR][1000 genomes]
rs9965236	1.00[EUR][1000 genomes]
rs9965728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9966061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9967557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909588	chr18:43474795-43554371	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43420200-43491800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:43440600-43489600	Weak transcription	Small Intestine	intestine
3	chr18:43442400-43500200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr18:43445600-43478000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:43445800-43483800	Weak transcription	K562	blood
6	chr18:43446200-43479400	Weak transcription	Fetal Brain Male	brain
7	chr18:43447000-43478400	Weak transcription	Stomach Mucosa	stomach
8	chr18:43447000-43491800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:43450800-43478000	Weak transcription	Right Ventricle	heart
10	chr18:43451800-43519600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr18:43452000-43479000	Weak transcription	HMEC	breast
12	chr18:43455400-43511400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr18:43456400-43490200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr18:43456400-43498000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr18:43456400-43500400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr18:43457200-43479200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr18:43459200-43478400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr18:43459200-43479200	Weak transcription	Psoas Muscle	Psoas
19	chr18:43460800-43500200	Strong transcription	Osteobl	bone
20	chr18:43460800-43500400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr18:43461000-43478000	Weak transcription	Pancreas	Pancrea
22	chr18:43462200-43478000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr18:43462200-43492000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:43462400-43477800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr18:43464800-43477800	Weak transcription	Brain Hippocampus Middle	brain
26	chr18:43464800-43478000	Weak transcription	Brain Anterior Caudate	brain
27	chr18:43464800-43478000	Weak transcription	Esophagus	oesophagus
28	chr18:43464800-43478000	Weak transcription	Gastric	stomach
29	chr18:43464800-43478200	Weak transcription	Ovary	ovary
30	chr18:43464800-43478200	Weak transcription	GM12878-XiMat	blood
31	chr18:43464800-43479800	Weak transcription	Hela-S3	cervix
32	chr18:43466400-43498400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr18:43467800-43477800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr18:43467800-43478000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr18:43467800-43478000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr18:43468000-43478000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr18:43469200-43478000	Weak transcription	Spleen	Spleen
38	chr18:43469400-43478000	Weak transcription	Aorta	Aorta
39	chr18:43469400-43478000	Weak transcription	Lung	lung
40	chr18:43469400-43487600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr18:43469600-43478000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr18:43469800-43478000	Weak transcription	Colonic Mucosa	Colon
43	chr18:43469800-43519000	Weak transcription	A549	lung
44	chr18:43470000-43478000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr18:43470000-43478000	Weak transcription	Brain Substantia Nigra	brain
46	chr18:43470000-43478200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr18:43470200-43477000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr18:43470200-43477800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr18:43470200-43478000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr18:43470400-43478000	Weak transcription	Brain Angular Gyrus	brain

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