Variant report

Variant	rs28898895
Chromosome Location	chr18:43326790-43326791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11873365	1.00[EUR][1000 genomes]
rs11875230	1.00[EUR][1000 genomes]
rs11877436	1.00[EUR][1000 genomes]
rs16978476	1.00[EUR][1000 genomes]
rs16978492	1.00[EUR][1000 genomes]
rs16978493	1.00[EUR][1000 genomes]
rs16978494	1.00[EUR][1000 genomes]
rs28438661	1.00[EUR][1000 genomes]
rs28450604	1.00[EUR][1000 genomes]
rs28460769	1.00[EUR][1000 genomes]
rs28461979	1.00[EUR][1000 genomes]
rs28483450	1.00[EUR][1000 genomes]
rs28605020	1.00[EUR][1000 genomes]
rs28669237	1.00[EUR][1000 genomes]
rs28698347	1.00[EUR][1000 genomes]
rs28757795	1.00[EUR][1000 genomes]
rs28898876	1.00[EUR][1000 genomes]
rs28898881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28898882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28898887	1.00[EUR][1000 genomes]
rs28994273	1.00[EUR][1000 genomes]
rs28994285	1.00[EUR][1000 genomes]
rs28994287	1.00[EUR][1000 genomes]
rs28994295	1.00[EUR][1000 genomes]
rs34674177	1.00[EUR][1000 genomes]
rs515596	1.00[EUR][1000 genomes]
rs56193937	1.00[EUR][1000 genomes]
rs7228878	1.00[EUR][1000 genomes]
rs7236728	1.00[EUR][1000 genomes]
rs7242125	1.00[EUR][1000 genomes]
rs7243454	1.00[EUR][1000 genomes]
rs73953681	1.00[EUR][1000 genomes]
rs8084290	1.00[EUR][1000 genomes]
rs8089544	1.00[EUR][1000 genomes]
rs8089798	1.00[EUR][1000 genomes]
rs8090934	1.00[EUR][1000 genomes]
rs9946629	1.00[EUR][1000 genomes]
rs9946802	1.00[EUR][1000 genomes]
rs9947795	1.00[EUR][1000 genomes]
rs9948555	1.00[EUR][1000 genomes]
rs9948715	1.00[EUR][1000 genomes]
rs9951978	1.00[EUR][1000 genomes]
rs9953484	1.00[EUR][1000 genomes]
rs9954523	1.00[EUR][1000 genomes]
rs9955015	1.00[EUR][1000 genomes]
rs9957147	1.00[EUR][1000 genomes]
rs9957464	1.00[EUR][1000 genomes]
rs9957999	1.00[EUR][1000 genomes]
rs9958360	1.00[EUR][1000 genomes]
rs9958987	1.00[EUR][1000 genomes]
rs9959151	1.00[EUR][1000 genomes]
rs9959239	1.00[EUR][1000 genomes]
rs9960635	1.00[EUR][1000 genomes]
rs9961926	1.00[EUR][1000 genomes]
rs9964753	1.00[EUR][1000 genomes]
rs9964968	1.00[EUR][1000 genomes]
rs9965236	1.00[EUR][1000 genomes]
rs9965728	1.00[EUR][1000 genomes]
rs9966061	1.00[EUR][1000 genomes]
rs9967557	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525268	chr18:42748365-43474795	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv909587	chr18:43269125-43333526	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43305000-43331200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr18:43307400-43332200	Weak transcription	Brain Anterior Caudate	brain
3	chr18:43312800-43335200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr18:43320000-43329800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr18:43320200-43327000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr18:43321200-43332800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr18:43321200-43335600	Weak transcription	Brain Substantia Nigra	brain
8	chr18:43324600-43331000	Enhancers	Fetal Intestine Large	intestine
9	chr18:43324800-43330600	Enhancers	Fetal Intestine Small	intestine
10	chr18:43325200-43326800	Enhancers	Stomach Mucosa	stomach
11	chr18:43325200-43327200	Enhancers	Left Ventricle	heart
12	chr18:43325200-43331000	Enhancers	Duodenum Mucosa	Duodenum
13	chr18:43325600-43326800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr18:43326000-43328400	Weak transcription	Primary T cells from cord blood	blood
15	chr18:43326200-43327000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr18:43326200-43328800	Strong transcription	Osteobl	bone
17	chr18:43326200-43329400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr18:43326200-43329600	Weak transcription	Pancreas	Pancrea
19	chr18:43326200-43334000	Weak transcription	Aorta	Aorta
20	chr18:43326400-43326800	Enhancers	Fetal Heart	heart
21	chr18:43326400-43328400	Weak transcription	Right Atrium	heart
22	chr18:43326400-43329600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr18:43326400-43329600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr18:43326400-43330000	Weak transcription	Lung	lung
25	chr18:43326400-43331800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr18:43326400-43331800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr18:43326600-43327000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr18:43326600-43328800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr18:43326600-43328800	Weak transcription	Small Intestine	intestine
30	chr18:43326600-43332000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr18:43326600-43343600	Weak transcription	Spleen	Spleen

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