Variant report

Variant	rs28461979
Chromosome Location	chr18:43530344-43530345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11872710	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11872746	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11872802	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11873365	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11875230	1.00[EUR][1000 genomes]
rs11877436	1.00[EUR][1000 genomes]
rs16978476	1.00[EUR][1000 genomes]
rs16978492	1.00[EUR][1000 genomes]
rs16978493	1.00[EUR][1000 genomes]
rs16978494	1.00[EUR][1000 genomes]
rs16978505	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28366995	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28372661	1.00[EUR][1000 genomes]
rs28438661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28450604	1.00[EUR][1000 genomes]
rs28460769	1.00[EUR][1000 genomes]
rs28483450	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28504009	1.00[EUR][1000 genomes]
rs28563782	1.00[EUR][1000 genomes]
rs28605020	1.00[EUR][1000 genomes]
rs28669237	1.00[EUR][1000 genomes]
rs28698347	1.00[EUR][1000 genomes]
rs28757795	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28898876	1.00[EUR][1000 genomes]
rs28898881	1.00[EUR][1000 genomes]
rs28898882	1.00[EUR][1000 genomes]
rs28898887	1.00[EUR][1000 genomes]
rs28898895	1.00[EUR][1000 genomes]
rs34674177	1.00[EUR][1000 genomes]
rs515596	1.00[EUR][1000 genomes]
rs56193937	1.00[EUR][1000 genomes]
rs7228878	1.00[EUR][1000 genomes]
rs7229410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7236728	1.00[EUR][1000 genomes]
rs7242125	1.00[EUR][1000 genomes]
rs7243454	1.00[EUR][1000 genomes]
rs73953681	1.00[EUR][1000 genomes]
rs8084290	1.00[EUR][1000 genomes]
rs8089544	1.00[EUR][1000 genomes]
rs8089798	1.00[EUR][1000 genomes]
rs8089860	1.00[EUR][1000 genomes]
rs8090934	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8094456	1.00[EUR][1000 genomes]
rs9946629	1.00[EUR][1000 genomes]
rs9946802	1.00[EUR][1000 genomes]
rs9947795	1.00[EUR][1000 genomes]
rs9948555	1.00[EUR][1000 genomes]
rs9948715	1.00[EUR][1000 genomes]
rs9951978	1.00[EUR][1000 genomes]
rs9953484	1.00[EUR][1000 genomes]
rs9954523	1.00[EUR][1000 genomes]
rs9955015	1.00[EUR][1000 genomes]
rs9957147	1.00[EUR][1000 genomes]
rs9957464	1.00[EUR][1000 genomes]
rs9957999	1.00[EUR][1000 genomes]
rs9958360	1.00[EUR][1000 genomes]
rs9958987	1.00[EUR][1000 genomes]
rs9959151	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9959239	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9960635	1.00[EUR][1000 genomes]
rs9961926	1.00[EUR][1000 genomes]
rs9964753	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9964968	1.00[EUR][1000 genomes]
rs9965236	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9965728	1.00[EUR][1000 genomes]
rs9966061	1.00[EUR][1000 genomes]
rs9966480	0.83[AFR][1000 genomes]
rs9967557	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909588	chr18:43474795-43554371	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43471800-43531600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr18:43472000-43536800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr18:43475200-43535800	Strong transcription	Placenta	Placenta
4	chr18:43477800-43536800	Strong transcription	Primary T cells from cord blood	blood
5	chr18:43478000-43536600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr18:43482400-43530800	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr18:43491600-43536000	Strong transcription	Fetal Intestine Large	intestine
8	chr18:43492400-43546600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:43494000-43546600	Weak transcription	Stomach Mucosa	stomach
10	chr18:43499800-43535200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr18:43501200-43535800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr18:43501200-43536000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr18:43512200-43536400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr18:43512400-43535200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr18:43512400-43535600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr18:43512600-43531000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr18:43514400-43536200	Strong transcription	Fetal Thymus	thymus
18	chr18:43514400-43536400	Strong transcription	Dnd41	blood
19	chr18:43514400-43537000	Strong transcription	Primary B cells from cord blood	blood
20	chr18:43514600-43536400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr18:43516800-43530600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr18:43517600-43533400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr18:43517600-43535200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr18:43517600-43535400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr18:43517600-43535600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr18:43517600-43536200	Strong transcription	Liver	Liver
27	chr18:43517800-43530800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr18:43517800-43533600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr18:43517800-43533600	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr18:43517800-43536000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr18:43517800-43536000	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr18:43517800-43536200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr18:43518000-43535200	Strong transcription	Lung	lung
34	chr18:43518000-43535200	Strong transcription	Thymus	Thymus
35	chr18:43518000-43535400	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr18:43518000-43535400	Strong transcription	Adipose Nuclei	Adipose
37	chr18:43518400-43530400	Strong transcription	NH-A	brain
38	chr18:43518400-43535200	Strong transcription	Colon Smooth Muscle	Colon
39	chr18:43518600-43533600	Strong transcription	Left Ventricle	heart
40	chr18:43518600-43535200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr18:43518600-43535200	Strong transcription	Ovary	ovary
42	chr18:43518600-43535600	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr18:43518600-43535600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr18:43518600-43536000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr18:43518600-43536200	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr18:43518600-43536400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr18:43518800-43530400	Strong transcription	NHLF	lung
48	chr18:43518800-43535600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr18:43519000-43535600	Strong transcription	Fetal Lung	lung
50	chr18:43519200-43532600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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