Variant report

Variant	rs9965236
Chromosome Location	chr18:43508598-43508599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11872710	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11872746	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11872802	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11873365	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11875230	1.00[EUR][1000 genomes]
rs11877436	1.00[EUR][1000 genomes]
rs16978476	1.00[EUR][1000 genomes]
rs16978492	1.00[EUR][1000 genomes]
rs16978493	1.00[EUR][1000 genomes]
rs16978494	1.00[EUR][1000 genomes]
rs16978505	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28366995	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28372661	1.00[EUR][1000 genomes]
rs28438661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28450604	1.00[EUR][1000 genomes]
rs28460769	1.00[EUR][1000 genomes]
rs28461979	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28483450	1.00[EUR][1000 genomes]
rs28504009	1.00[EUR][1000 genomes]
rs28563782	1.00[EUR][1000 genomes]
rs28605020	1.00[EUR][1000 genomes]
rs28669237	1.00[EUR][1000 genomes]
rs28698347	1.00[EUR][1000 genomes]
rs28757795	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28898876	1.00[EUR][1000 genomes]
rs28898881	1.00[EUR][1000 genomes]
rs28898882	1.00[EUR][1000 genomes]
rs28898887	1.00[EUR][1000 genomes]
rs28898895	1.00[EUR][1000 genomes]
rs28994273	1.00[EUR][1000 genomes]
rs28994285	1.00[EUR][1000 genomes]
rs28994287	1.00[EUR][1000 genomes]
rs28994295	1.00[EUR][1000 genomes]
rs34674177	1.00[EUR][1000 genomes]
rs515596	1.00[EUR][1000 genomes]
rs56193937	1.00[EUR][1000 genomes]
rs7228878	1.00[EUR][1000 genomes]
rs7229410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7236728	1.00[EUR][1000 genomes]
rs7242125	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7243454	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73953681	1.00[EUR][1000 genomes]
rs8084290	1.00[EUR][1000 genomes]
rs8089544	1.00[EUR][1000 genomes]
rs8089798	1.00[EUR][1000 genomes]
rs8089860	1.00[EUR][1000 genomes]
rs8090934	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8094456	1.00[EUR][1000 genomes]
rs9946629	1.00[EUR][1000 genomes]
rs9946802	1.00[EUR][1000 genomes]
rs9947795	1.00[EUR][1000 genomes]
rs9948555	1.00[EUR][1000 genomes]
rs9948715	1.00[EUR][1000 genomes]
rs9951978	1.00[EUR][1000 genomes]
rs9953484	1.00[EUR][1000 genomes]
rs9954523	1.00[EUR][1000 genomes]
rs9955015	1.00[EUR][1000 genomes]
rs9957147	1.00[EUR][1000 genomes]
rs9957464	1.00[EUR][1000 genomes]
rs9957999	1.00[EUR][1000 genomes]
rs9958360	1.00[EUR][1000 genomes]
rs9958987	1.00[EUR][1000 genomes]
rs9959151	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9959239	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9960635	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9961926	1.00[EUR][1000 genomes]
rs9964753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9964968	1.00[EUR][1000 genomes]
rs9965728	1.00[EUR][1000 genomes]
rs9966061	1.00[EUR][1000 genomes]
rs9966480	0.98[AFR][1000 genomes]
rs9967557	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909588	chr18:43474795-43554371	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43451800-43519600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:43455400-43511400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr18:43469800-43519000	Weak transcription	A549	lung
4	chr18:43471800-43531600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr18:43472000-43536800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr18:43474600-43511000	Strong transcription	Primary B cells from cord blood	blood
7	chr18:43474600-43511200	Strong transcription	Fetal Muscle Trunk	muscle
8	chr18:43474800-43511200	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr18:43475200-43535800	Strong transcription	Placenta	Placenta
10	chr18:43476600-43524000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr18:43477800-43513600	Strong transcription	Fetal Thymus	thymus
12	chr18:43477800-43516000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr18:43477800-43536800	Strong transcription	Primary T cells from cord blood	blood
14	chr18:43478000-43511400	Strong transcription	Dnd41	blood
15	chr18:43478000-43536600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr18:43482400-43530800	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr18:43485200-43511400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr18:43491600-43511200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr18:43491600-43536000	Strong transcription	Fetal Intestine Large	intestine
20	chr18:43492400-43546600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr18:43494000-43546600	Weak transcription	Stomach Mucosa	stomach
22	chr18:43494200-43520800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr18:43495800-43512800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr18:43496400-43518800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr18:43496600-43518800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr18:43499200-43516200	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr18:43499800-43509800	Strong transcription	Fetal Brain Female	brain
28	chr18:43499800-43511600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr18:43499800-43535200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr18:43500000-43510200	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr18:43500200-43508800	Strong transcription	Fetal Stomach	stomach
32	chr18:43500200-43513600	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr18:43501000-43510800	Strong transcription	Fetal Muscle Leg	muscle
34	chr18:43501000-43515000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr18:43501000-43515600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr18:43501000-43515800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr18:43501000-43516600	Strong transcription	Adipose Nuclei	Adipose
38	chr18:43501000-43518800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr18:43501200-43511400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr18:43501200-43511600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr18:43501200-43514800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr18:43501200-43515600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr18:43501200-43516600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr18:43501200-43535800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr18:43501200-43536000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr18:43501400-43511600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr18:43501600-43510800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr18:43501800-43513400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr18:43502000-43510600	Strong transcription	Left Ventricle	heart
50	chr18:43502600-43519400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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