The 2.0 version of rSNPBase

Variant report

Variant rs9948715
Chromosome Location chr18:43420656-43420657
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:43417400-43420800 Enhancers Muscle Satellite Cultured Cells --
2 chr18:43417800-43420800 Enhancers HMEC breast
3 chr18:43418400-43439000 Weak transcription A549 lung
4 chr18:43418600-43437400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr18:43419000-43422400 Weak transcription Right Atrium heart
6 chr18:43419000-43424200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr18:43419000-43425000 Weak transcription Lung lung
8 chr18:43419000-43429800 Weak transcription Aorta Aorta
9 chr18:43419200-43420800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr18:43419200-43420800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr18:43419200-43420800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr18:43419200-43421000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
13 chr18:43419200-43423200 Enhancers Thymus Thymus
14 chr18:43419200-43427200 Weak transcription Ovary ovary
15 chr18:43419200-43434000 Weak transcription Small Intestine intestine
16 chr18:43419400-43420800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
17 chr18:43419400-43420800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr18:43419400-43429600 Weak transcription Right Ventricle heart
19 chr18:43419600-43420800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
20 chr18:43419600-43425200 Weak transcription Spleen Spleen
21 chr18:43419600-43428000 Weak transcription Primary T cells from cord blood blood
22 chr18:43419600-43428200 Weak transcription Pancreas Pancrea
23 chr18:43419600-43429400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr18:43419600-43429600 Weak transcription Gastric stomach
25 chr18:43419600-43429800 Weak transcription Left Ventricle heart
26 chr18:43419800-43431400 Weak transcription iPS-18 Cell Line embryonic stem cell
27 chr18:43420000-43422800 Weak transcription Liver Liver
28 chr18:43420000-43423400 Enhancers Fetal Thymus thymus
29 chr18:43420000-43425800 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr18:43420000-43427600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr18:43420000-43428200 Weak transcription NHLF lung
32 chr18:43420000-43428600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
33 chr18:43420000-43429200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr18:43420000-43429200 Weak transcription Duodenum Mucosa Duodenum
35 chr18:43420000-43429400 Weak transcription Primary hematopoietic stem cells blood
36 chr18:43420000-43432400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr18:43420000-43436200 Weak transcription Hela-S3 cervix
38 chr18:43420200-43429600 Weak transcription H1 Cell Line embryonic stem cell
39 chr18:43420200-43431200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr18:43420200-43491800 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr18:43420400-43421200 Genic enhancers Primary hematopoietic stem cells short term culture blood
42 chr18:43420400-43427200 Weak transcription Osteobl bone
43 chr18:43420600-43422400 Weak transcription Fetal Intestine Small intestine
44 chr18:43420600-43425000 Weak transcription NH-A brain
45 chr18:43420600-43427000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr18:43420600-43428000 Weak transcription NHEK skin
47 chr18:43420600-43429200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr18:43420600-43429200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr18:43420600-43429200 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr18:43420600-43429200 Weak transcription HSMM muscle

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Last update: Aug 31, 2015