Variant report

Variant	rs7228878
Chromosome Location	chr18:43458685-43458686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43418723..43420933-chr18:43457769..43459405,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11872710	1.00[EUR][1000 genomes]
rs11872746	1.00[EUR][1000 genomes]
rs11872802	1.00[EUR][1000 genomes]
rs11873365	1.00[EUR][1000 genomes]
rs11875230	1.00[EUR][1000 genomes]
rs11877436	1.00[EUR][1000 genomes]
rs16978476	1.00[EUR][1000 genomes]
rs16978492	1.00[EUR][1000 genomes]
rs16978493	1.00[EUR][1000 genomes]
rs16978494	1.00[EUR][1000 genomes]
rs16978505	1.00[EUR][1000 genomes]
rs28366995	1.00[EUR][1000 genomes]
rs28372661	1.00[EUR][1000 genomes]
rs28438661	1.00[EUR][1000 genomes]
rs28450604	1.00[EUR][1000 genomes]
rs28460769	1.00[EUR][1000 genomes]
rs28461979	1.00[EUR][1000 genomes]
rs28483450	1.00[EUR][1000 genomes]
rs28504009	1.00[EUR][1000 genomes]
rs28563782	1.00[EUR][1000 genomes]
rs28605020	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28669237	1.00[EUR][1000 genomes]
rs28698347	1.00[EUR][1000 genomes]
rs28757795	1.00[EUR][1000 genomes]
rs28898876	1.00[EUR][1000 genomes]
rs28898881	1.00[EUR][1000 genomes]
rs28898882	1.00[EUR][1000 genomes]
rs28898887	1.00[EUR][1000 genomes]
rs28898895	1.00[EUR][1000 genomes]
rs28994273	1.00[EUR][1000 genomes]
rs28994285	1.00[EUR][1000 genomes]
rs28994287	1.00[EUR][1000 genomes]
rs28994295	1.00[EUR][1000 genomes]
rs34674177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs515596	1.00[EUR][1000 genomes]
rs56193937	1.00[EUR][1000 genomes]
rs7229410	1.00[EUR][1000 genomes]
rs7236728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7242125	1.00[EUR][1000 genomes]
rs7243454	1.00[EUR][1000 genomes]
rs73953681	1.00[EUR][1000 genomes]
rs8084290	1.00[EUR][1000 genomes]
rs8089544	1.00[EUR][1000 genomes]
rs8089798	1.00[EUR][1000 genomes]
rs8089860	1.00[EUR][1000 genomes]
rs8090934	1.00[EUR][1000 genomes]
rs8094456	1.00[EUR][1000 genomes]
rs9946629	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9946802	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9947795	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9948555	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9948715	1.00[EUR][1000 genomes]
rs9951978	1.00[EUR][1000 genomes]
rs9953484	1.00[EUR][1000 genomes]
rs9954523	1.00[EUR][1000 genomes]
rs9955015	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9957147	1.00[EUR][1000 genomes]
rs9957464	1.00[EUR][1000 genomes]
rs9957999	1.00[EUR][1000 genomes]
rs9958360	1.00[EUR][1000 genomes]
rs9958987	1.00[EUR][1000 genomes]
rs9959151	1.00[EUR][1000 genomes]
rs9959239	1.00[EUR][1000 genomes]
rs9960635	1.00[EUR][1000 genomes]
rs9961926	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9964753	1.00[EUR][1000 genomes]
rs9964968	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9965236	1.00[EUR][1000 genomes]
rs9965728	1.00[EUR][1000 genomes]
rs9966061	1.00[EUR][1000 genomes]
rs9967557	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525268	chr18:42748365-43474795	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43420200-43491800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:43428400-43467800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr18:43429000-43464800	Strong transcription	Fetal Intestine Large	intestine
4	chr18:43429200-43462400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr18:43429200-43464800	Strong transcription	HSMM	muscle
6	chr18:43429200-43473200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr18:43429400-43468600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr18:43432000-43470400	Strong transcription	Adipose Nuclei	Adipose
9	chr18:43440600-43489600	Weak transcription	Small Intestine	intestine
10	chr18:43442400-43500200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr18:43445600-43478000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr18:43445800-43483800	Weak transcription	K562	blood
13	chr18:43446200-43479400	Weak transcription	Fetal Brain Male	brain
14	chr18:43447000-43460400	Weak transcription	Pancreas	Pancrea
15	chr18:43447000-43478400	Weak transcription	Stomach Mucosa	stomach
16	chr18:43447000-43491800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr18:43447600-43464000	Weak transcription	Aorta	Aorta
18	chr18:43447600-43469000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr18:43448000-43458800	Weak transcription	HUVEC	blood vessel
20	chr18:43448200-43464000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr18:43448200-43464200	Weak transcription	Brain Angular Gyrus	brain
22	chr18:43448400-43459600	Strong transcription	Liver	Liver
23	chr18:43449600-43465000	Strong transcription	Duodenum Mucosa	Duodenum
24	chr18:43449600-43465000	Strong transcription	Placenta	Placenta
25	chr18:43450000-43459400	Strong transcription	NHLF	lung
26	chr18:43450800-43478000	Weak transcription	Right Ventricle	heart
27	chr18:43451800-43519600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr18:43452000-43459200	Strong transcription	NHDF-Ad	bronchial
29	chr18:43452000-43479000	Weak transcription	HMEC	breast
30	chr18:43452200-43464800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr18:43452400-43470400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr18:43452800-43464800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr18:43453400-43459600	Strong transcription	Fetal Thymus	thymus
34	chr18:43453400-43470400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr18:43453600-43459200	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr18:43453600-43459600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr18:43454000-43460000	Strong transcription	Fetal Lung	lung
38	chr18:43454200-43460200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr18:43454400-43459600	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr18:43454400-43463600	Weak transcription	Hela-S3	cervix
41	chr18:43454600-43459400	Strong transcription	Brain Cingulate Gyrus	brain
42	chr18:43454800-43463800	Weak transcription	Esophagus	oesophagus
43	chr18:43455000-43458800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr18:43455000-43460200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr18:43455000-43467200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr18:43455000-43469000	Weak transcription	Colonic Mucosa	Colon
47	chr18:43455200-43459600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr18:43455200-43459800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr18:43455200-43460200	Strong transcription	Osteobl	bone
50	chr18:43455200-43464200	Weak transcription	Gastric	stomach

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