The 2.0 version of rSNPBase

Variant report

Variant rs2932588
Chromosome Location chr1:151960325-151960326
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:151941600-151961200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr1:151949200-151963200 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr1:151951000-151961800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:151951600-151960800 Weak transcription Fetal Thymus thymus
5 chr1:151951800-151961800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:151952400-151960800 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr1:151952600-151960400 Genic enhancers NHEK skin
8 chr1:151954000-151960400 Strong transcription Breast Myoepithelial Primary Cells Breast
9 chr1:151954000-151960400 Weak transcription Right Atrium heart
10 chr1:151955800-151961600 Weak transcription Brain Anterior Caudate brain
11 chr1:151956200-151961000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:151956400-151960600 Genic enhancers HMEC breast
13 chr1:151956600-151961600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:151957000-151961200 Weak transcription Pancreas Pancrea
15 chr1:151957200-151961600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:151957400-151960400 Genic enhancers A549 lung
17 chr1:151957600-151960400 Weak transcription Stomach Mucosa stomach
18 chr1:151957600-151961000 Weak transcription Gastric stomach
19 chr1:151957800-151961000 Weak transcription Primary hematopoietic stem cells blood
20 chr1:151957800-151961800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:151958000-151960400 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr1:151958000-151961000 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr1:151958000-151961000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr1:151958000-151961600 Weak transcription Aorta Aorta
25 chr1:151958200-151960600 Weak transcription Rectal Smooth Muscle rectum
26 chr1:151958200-151961000 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr1:151958200-151961200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr1:151958200-151961400 Weak transcription Colon Smooth Muscle Colon
29 chr1:151958400-151960400 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr1:151958400-151960400 Weak transcription Fetal Stomach stomach
31 chr1:151958400-151960400 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr1:151958400-151960800 Weak transcription Right Ventricle heart
33 chr1:151958400-151961200 Weak transcription Lung lung
34 chr1:151958400-151961200 Weak transcription Spleen Spleen
35 chr1:151958600-151960400 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr1:151958600-151960400 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr1:151958600-151960600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr1:151958600-151960800 Weak transcription Colonic Mucosa Colon
39 chr1:151958600-151960800 Weak transcription Fetal Kidney kidney
40 chr1:151958600-151961000 Weak transcription Ovary ovary
41 chr1:151958600-151961800 Weak transcription H1 Cell Line embryonic stem cell
42 chr1:151958600-151963800 Weak transcription Primary T killer memory cells from peripheral blood blood
43 chr1:151958800-151960400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr1:151958800-151960400 Weak transcription Fetal Lung lung
45 chr1:151958800-151960400 Weak transcription Left Ventricle heart
46 chr1:151958800-151960400 Weak transcription Small Intestine intestine
47 chr1:151958800-151960400 Weak transcription HSMMtube muscle
48 chr1:151958800-151960600 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr1:151958800-151960600 Weak transcription Stomach Smooth Muscle stomach
50 chr1:151958800-151960800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015