The 2.0 version of rSNPBase

Variant report

Variant rs10888449
Chromosome Location chr1:151874385-151874386
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:151831000-151881400 Weak transcription Ovary ovary
2 chr1:151841200-151880800 Weak transcription NHLF lung
3 chr1:151844400-151881200 Weak transcription Aorta Aorta
4 chr1:151844800-151877600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:151854000-151880200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:151860600-151877600 Weak transcription Muscle Satellite Cultured Cells --
7 chr1:151860800-151879800 Weak transcription Brain Angular Gyrus brain
8 chr1:151861600-151879800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr1:151862400-151880400 Weak transcription Colon Smooth Muscle Colon
10 chr1:151864800-151881400 Weak transcription Brain Substantia Nigra brain
11 chr1:151866200-151879600 Weak transcription NHDF-Ad bronchial
12 chr1:151866200-151880200 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr1:151866400-151874400 Weak transcription Fetal Lung lung
14 chr1:151866600-151879800 Weak transcription Fetal Muscle Trunk muscle
15 chr1:151867200-151879600 Weak transcription Fetal Stomach stomach
16 chr1:151867400-151877600 Weak transcription Monocytes-CD14+_RO01746 blood
17 chr1:151867400-151877600 Weak transcription Osteobl bone
18 chr1:151867400-151878600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr1:151867600-151877200 Weak transcription Placenta Amnion Placenta Amnion
20 chr1:151867600-151877600 Weak transcription NH-A brain
21 chr1:151868000-151879800 Weak transcription Liver Liver
22 chr1:151868000-151880200 Weak transcription Brain Hippocampus Middle brain
23 chr1:151868000-151880400 Weak transcription Stomach Smooth Muscle stomach
24 chr1:151868000-151880800 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr1:151871200-151875200 Weak transcription Pancreas Pancrea
26 chr1:151871200-151876400 Weak transcription Psoas Muscle Psoas
27 chr1:151871400-151874600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:151871400-151877600 Weak transcription HMEC breast
29 chr1:151871400-151878800 Weak transcription Lung lung
30 chr1:151871400-151878800 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr1:151871400-151879800 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr1:151871400-151880400 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr1:151871600-151876200 Enhancers Primary T helper naive cells from peripheral blood blood
34 chr1:151871600-151877000 Enhancers Primary T helper cells PMA-I stimulated --
35 chr1:151871600-151877000 Enhancers Primary T helper cells fromperipheralblood blood
36 chr1:151871600-151877600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
37 chr1:151871600-151877800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
38 chr1:151871800-151876000 Weak transcription K562 blood
39 chr1:151871800-151878800 Weak transcription Thymus Thymus
40 chr1:151872400-151874400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr1:151872400-151877400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr1:151872600-151874800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr1:151872600-151874800 Weak transcription Primary T regulatory cells fromperipheralblood blood
44 chr1:151872800-151880800 Weak transcription Right Atrium heart
45 chr1:151873000-151874400 Weak transcription Primary T killer memory cells from peripheral blood blood
46 chr1:151873000-151875400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
47 chr1:151873000-151876000 Weak transcription Primary T killer naive cells fromperipheralblood blood
48 chr1:151873000-151877000 Enhancers Primary T helper naive cells fromperipheralblood blood
49 chr1:151873000-151880800 Weak transcription Brain Cingulate Gyrus brain
50 chr1:151873600-151875600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015