The 2.0 version of rSNPBase

Variant report

Variant rs971888
Chromosome Location chr1:151943278-151943279
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:151933600-151945000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
2 chr1:151934600-151953400 Weak transcription Psoas Muscle Psoas
3 chr1:151936000-151945000 Weak transcription HSMMtube muscle
4 chr1:151937200-151945000 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr1:151938400-151945000 Enhancers HMEC breast
6 chr1:151938400-151946200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr1:151939600-151950800 Enhancers Fetal Intestine Small intestine
8 chr1:151940400-151944400 Enhancers Placenta Amnion Placenta Amnion
9 chr1:151940400-151945000 Enhancers Hela-S3 cervix
10 chr1:151940600-151944000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr1:151940800-151944200 Enhancers NHDF-Ad bronchial
12 chr1:151940800-151945200 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr1:151941000-151943400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr1:151941000-151944800 Weak transcription Rectal Smooth Muscle rectum
15 chr1:151941000-151945000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:151941000-151945000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr1:151941000-151946200 Weak transcription Colonic Mucosa Colon
18 chr1:151941000-151953200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr1:151941000-151953200 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr1:151941000-151953400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr1:151941000-151953400 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr1:151941000-151954800 Weak transcription Primary T helper naive cells fromperipheralblood blood
23 chr1:151941200-151945200 Weak transcription Placenta Placenta
24 chr1:151941200-151952800 Weak transcription Primary T helper cells fromperipheralblood blood
25 chr1:151941200-151952800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
26 chr1:151941200-151953000 Weak transcription Primary T cells fromperipheralblood blood
27 chr1:151941200-151955200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
28 chr1:151941400-151944200 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr1:151941400-151945000 Weak transcription iPS-20b Cell Line embryonic stem cell
30 chr1:151941400-151945000 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr1:151941400-151945200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr1:151941400-151947200 Weak transcription Liver Liver
33 chr1:151941600-151943800 Weak transcription HUES48 Cell Line embryonic stem cell
34 chr1:151941600-151944000 Weak transcription ES-WA7 Cell Line embryonic stem cell
35 chr1:151941600-151945200 Weak transcription H1 Cell Line embryonic stem cell
36 chr1:151941600-151961200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
37 chr1:151941800-151943400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:151941800-151944000 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr1:151941800-151945000 Weak transcription H9 Cell Line embryonic stem cell
40 chr1:151941800-151945000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr1:151941800-151945000 Weak transcription NH-A brain
42 chr1:151941800-151945200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr1:151941800-151945400 Weak transcription Right Atrium heart
44 chr1:151941800-151949400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
45 chr1:151941800-151953000 Weak transcription Lung lung
46 chr1:151941800-151953600 Weak transcription Gastric stomach
47 chr1:151941800-151956200 Weak transcription Pancreas Pancrea
48 chr1:151942000-151945000 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr1:151942000-151945200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr1:151942000-151945400 Weak transcription HepG2 liver

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Last update: Aug 31, 2015