The 2.0 version of rSNPBase

Variant report

Variant rs2999524
Chromosome Location chr1:151950070-151950071
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:151934600-151953400 Weak transcription Psoas Muscle Psoas
2 chr1:151939600-151950800 Enhancers Fetal Intestine Small intestine
3 chr1:151941000-151953200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
4 chr1:151941000-151953200 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr1:151941000-151953400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr1:151941000-151953400 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr1:151941000-151954800 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr1:151941200-151952800 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr1:151941200-151952800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
10 chr1:151941200-151953000 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:151941200-151955200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr1:151941600-151961200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr1:151941800-151953000 Weak transcription Lung lung
14 chr1:151941800-151953600 Weak transcription Gastric stomach
15 chr1:151941800-151956200 Weak transcription Pancreas Pancrea
16 chr1:151942400-151951800 Enhancers Fetal Intestine Large intestine
17 chr1:151943000-151953000 Weak transcription Spleen Spleen
18 chr1:151945400-151952400 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr1:151945400-151953400 Weak transcription H9 Cell Line embryonic stem cell
20 chr1:151945600-151950600 Enhancers Duodenum Mucosa Duodenum
21 chr1:151945600-151950800 Enhancers Rectal Mucosa Donor 31 rectum
22 chr1:151945600-151953000 Weak transcription Stomach Smooth Muscle stomach
23 chr1:151945600-151953600 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr1:151945600-151953800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr1:151945600-151953800 Weak transcription Rectal Smooth Muscle rectum
26 chr1:151946000-151951200 Enhancers Hela-S3 cervix
27 chr1:151946000-151952600 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:151946000-151954800 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr1:151946000-151954800 Weak transcription iPS-20b Cell Line embryonic stem cell
30 chr1:151946200-151952800 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr1:151946200-151953000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr1:151946200-151953000 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr1:151946200-151954800 Weak transcription H1 Cell Line embryonic stem cell
34 chr1:151946200-151954800 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr1:151946200-151956200 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr1:151946400-151952400 Weak transcription HSMMtube muscle
37 chr1:151946600-151957000 Weak transcription ES-WA7 Cell Line embryonic stem cell
38 chr1:151946600-151958800 Weak transcription iPS-15b Cell Line embryonic stem cell
39 chr1:151947400-151950800 Enhancers K562 blood
40 chr1:151947600-151952400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:151947600-151953400 Enhancers Placenta Amnion Placenta Amnion
42 chr1:151947800-151951800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr1:151948000-151951800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr1:151948000-151956200 Weak transcription Primary T killer naive cells fromperipheralblood blood
45 chr1:151948400-151951200 Enhancers HepG2 liver
46 chr1:151948400-151955200 Weak transcription Primary T helper naive cells from peripheral blood blood
47 chr1:151948600-151951000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:151948800-151950200 Enhancers NHEK skin
49 chr1:151948800-151950600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:151949000-151950600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015