Variant report

Variant	rs2987730
Chromosome Location	chr9:103977559-103977560
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10989435	0.88[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10989436	0.86[ASN][1000 genomes]
rs10989437	0.86[ASN][1000 genomes]
rs10989438	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10989439	0.86[ASN][1000 genomes]
rs10989441	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10989460	0.82[JPT][hapmap]
rs12237723	0.86[ASN][1000 genomes]
rs16920107	0.82[JPT][hapmap]
rs2052977	0.82[JPT][hapmap]
rs2567313	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2567317	0.80[CEU][hapmap]
rs2771073	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987742	0.84[CEU][hapmap]
rs411448	0.92[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4147116	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs4742809	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs57966478	0.86[ASN][1000 genomes]
rs643697	0.88[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103964600-103978400	Weak transcription	HepG2	liver
2	chr9:103972400-103980600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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