Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103959474..103962405-chr9:103969484..103971633,2	K562	blood:
2	chr9:103969644..103971672-chr9:103975838..103977609,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10989435	0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs10989436	0.96[ASN][1000 genomes]
rs10989437	0.96[ASN][1000 genomes]
rs10989438	0.89[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs10989439	0.89[CHB][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs10989441	0.89[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs10989449	0.83[ASN][1000 genomes]
rs10989451	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10989460	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs12237723	0.96[ASN][1000 genomes]
rs12237965	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1341764	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs16920107	0.85[JPT][hapmap]
rs2052977	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2567313	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2771073	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2987729	0.85[CEU][hapmap]
rs2987730	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2987742	0.81[CEU][hapmap]
rs411448	0.93[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4147116	0.89[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs57966478	0.96[ASN][1000 genomes]
rs643697	0.96[CEU][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103964600-103978400	Weak transcription	HepG2	liver
2	chr9:103970200-103971800	Weak transcription	Brain Anterior Caudate	brain
3	chr9:103970200-103972400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr9:103970200-103973600	Weak transcription	Brain Hippocampus Middle	brain

Quick Search: