Variant report

Variant	rs10989436
Chromosome Location	chr9:103977418-103977419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10989435	1.00[ASN][1000 genomes]
rs10989437	1.00[ASN][1000 genomes]
rs10989438	1.00[ASN][1000 genomes]
rs10989439	1.00[ASN][1000 genomes]
rs10989441	1.00[ASN][1000 genomes]
rs10989443	0.83[ASN][1000 genomes]
rs10989445	0.83[ASN][1000 genomes]
rs10989449	0.87[ASN][1000 genomes]
rs10989451	0.87[ASN][1000 genomes]
rs10989460	0.87[ASN][1000 genomes]
rs12237723	1.00[ASN][1000 genomes]
rs12237965	0.85[ASN][1000 genomes]
rs1341764	0.87[ASN][1000 genomes]
rs2052977	0.85[ASN][1000 genomes]
rs2567313	0.90[ASN][1000 genomes]
rs2771073	0.88[ASN][1000 genomes]
rs2987730	0.86[ASN][1000 genomes]
rs411448	0.96[ASN][1000 genomes]
rs4147116	1.00[ASN][1000 genomes]
rs4742809	0.96[ASN][1000 genomes]
rs57966478	1.00[ASN][1000 genomes]
rs643697	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103964600-103978400	Weak transcription	HepG2	liver
2	chr9:103972400-103980600	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links