Variant report

Variant	rs411448
Chromosome Location	chr9:103976218-103976219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103969644..103971672-chr9:103975838..103977609,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10819914	1.00[JPT][hapmap]
rs10819917	0.82[JPT][hapmap]
rs10989435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10989436	0.96[ASN][1000 genomes]
rs10989437	0.96[ASN][1000 genomes]
rs10989438	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10989439	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10989441	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10989444	0.82[JPT][hapmap]
rs10989447	0.82[JPT][hapmap]
rs10989449	0.83[ASN][1000 genomes]
rs10989451	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10989452	0.85[JPT][hapmap]
rs10989457	0.85[JPT][hapmap]
rs10989458	0.85[JPT][hapmap]
rs10989460	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12237444	0.85[JPT][hapmap]
rs12237723	0.96[ASN][1000 genomes]
rs12237965	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1341764	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1341765	0.85[JPT][hapmap]
rs16920106	0.82[JPT][hapmap]
rs2052977	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2567313	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2567317	0.81[CEU][hapmap]
rs2771073	0.96[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2987729	0.88[CEU][hapmap]
rs2987730	0.92[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2987742	0.85[CEU][hapmap]
rs4147116	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4742809	0.93[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57966478	0.96[ASN][1000 genomes]
rs643697	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103964600-103978400	Weak transcription	HepG2	liver
2	chr9:103972400-103980600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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