Variant report

Variant	rs10989439
Chromosome Location	chr9:103982032-103982033
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10819914	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10819917	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs10989435	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989436	1.00[ASN][1000 genomes]
rs10989437	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989441	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989443	0.83[ASN][1000 genomes]
rs10989444	1.00[ASW][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs10989445	0.83[ASN][1000 genomes]
rs10989447	1.00[ASW][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs10989449	0.87[ASN][1000 genomes]
rs10989451	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10989452	0.82[JPT][hapmap]
rs10989457	0.82[JPT][hapmap]
rs10989458	0.82[JPT][hapmap]
rs10989460	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12237444	0.82[JPT][hapmap]
rs12237723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12237965	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1341764	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1341765	0.82[JPT][hapmap]
rs1341767	1.00[ASW][hapmap];0.81[CHD][hapmap];1.00[LWK][hapmap];0.97[AFR][1000 genomes]
rs16920106	0.82[JPT][hapmap]
rs2052977	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2567313	0.90[ASN][1000 genomes]
rs2771073	0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs2987730	0.86[ASN][1000 genomes]
rs411448	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4147116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742809	0.89[CHB][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs57966478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs643697	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103980600-103983800	Enhancers	Stomach Mucosa	stomach
2	chr9:103981000-103982400	Weak transcription	Small Intestine	intestine
3	chr9:103981800-103992000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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