Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104000351..104000934-chr9:104012101..104012914,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10819914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10989435	0.87[ASN][1000 genomes]
rs10989436	0.87[ASN][1000 genomes]
rs10989437	0.87[ASN][1000 genomes]
rs10989438	0.87[ASN][1000 genomes]
rs10989439	0.87[ASN][1000 genomes]
rs10989441	0.87[ASN][1000 genomes]
rs10989443	0.96[ASN][1000 genomes]
rs10989445	0.96[ASN][1000 genomes]
rs10989447	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10989451	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989453	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10989460	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12237723	0.87[ASN][1000 genomes]
rs12237965	0.98[ASN][1000 genomes]
rs1341764	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341767	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16920106	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16920107	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1857028	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2052977	0.98[ASN][1000 genomes]
rs411448	0.83[ASN][1000 genomes]
rs4147116	0.87[ASN][1000 genomes]
rs4742809	0.83[ASN][1000 genomes]
rs57966478	0.87[ASN][1000 genomes]
rs643697	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378820	chr9:103999106-104001679	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3372627	chr9:103999156-104002004	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3355579	chr9:103999631-104001229	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103997800-104000800	Weak transcription	Brain Anterior Caudate	brain
2	chr9:103998000-104016800	Weak transcription	HepG2	liver
3	chr9:103998200-104000800	Weak transcription	Brain Substantia Nigra	brain
4	chr9:103998200-104006000	Weak transcription	Brain Angular Gyrus	brain
5	chr9:103998800-104004400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:103999800-104001000	Weak transcription	Brain Hippocampus Middle	brain

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