Variant report

Variant	rs1341764
Chromosome Location	chr9:103996461-103996462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10819914	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10819917	0.87[CHD][hapmap];0.82[JPT][hapmap]
rs10989435	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10989436	0.87[ASN][1000 genomes]
rs10989437	0.87[ASN][1000 genomes]
rs10989438	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10989439	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10989441	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10989443	0.96[ASN][1000 genomes]
rs10989444	1.00[ASW][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10989445	0.96[ASN][1000 genomes]
rs10989447	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989449	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989451	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989452	0.82[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10989453	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989457	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs10989458	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs10989460	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12237444	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs12237723	0.87[ASN][1000 genomes]
rs12237965	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1341765	0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1341766	0.89[AFR][1000 genomes]
rs1341767	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16920106	1.00[CEU][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16920107	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1857028	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2052977	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2771073	0.82[JPT][hapmap]
rs411448	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4147116	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4742809	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs57966478	0.87[ASN][1000 genomes]
rs643697	1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103992400-103997400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:103992800-103997400	Weak transcription	Fetal Brain Male	brain
3	chr9:103993000-103997400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:103993000-103997400	Weak transcription	Brain Angular Gyrus	brain
5	chr9:103993600-103997200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:103994200-103997000	Weak transcription	Brain Substantia Nigra	brain
7	chr9:103994400-103997400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:103994400-103997600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:103994600-103997400	Weak transcription	Brain Anterior Caudate	brain
10	chr9:103994600-103997600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:103994800-103996600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:103994800-103997400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:103994800-103997400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:103995000-103997400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:103995200-103997200	Weak transcription	HepG2	liver
16	chr9:103995400-103997400	Weak transcription	Liver	Liver
17	chr9:103995600-103997400	Weak transcription	Brain Hippocampus Middle	brain
18	chr9:103996200-103996800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr9:103996200-103997800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr9:103996200-103998000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr9:103996400-103996600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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