Variant report

Variant	rs1341767
Chromosome Location	chr9:104003237-104003238
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10819914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819917	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10989435	0.97[AFR][1000 genomes]
rs10989437	0.97[AFR][1000 genomes]
rs10989438	0.94[AFR][1000 genomes]
rs10989439	1.00[ASW][hapmap];0.81[CHD][hapmap];1.00[LWK][hapmap];0.97[AFR][1000 genomes]
rs10989441	0.97[AFR][1000 genomes]
rs10989444	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10989447	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989449	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10989451	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989452	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10989453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10989458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10989459	0.98[ASN][1000 genomes]
rs10989460	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12237444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12237723	0.97[AFR][1000 genomes]
rs12237965	0.90[CHB][hapmap];0.87[CHD][hapmap]
rs1341764	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341765	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1341766	0.98[ASN][1000 genomes]
rs16920106	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16920107	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1857028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052977	0.90[CHB][hapmap]
rs4147116	0.97[AFR][1000 genomes]
rs57966478	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103998000-104016800	Weak transcription	HepG2	liver
2	chr9:103998200-104006000	Weak transcription	Brain Angular Gyrus	brain
3	chr9:103998800-104004400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:104001200-104004400	Weak transcription	Brain Anterior Caudate	brain
5	chr9:104001400-104004800	Weak transcription	Brain Substantia Nigra	brain
6	chr9:104003200-104003600	Enhancers	Adipose Nuclei	Adipose

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