Variant report

Variant	rs12237965
Chromosome Location	chr9:104021756-104021757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104019971..104022565-chr9:104029528..104032164,2	K562	blood:

Variant related genes	Relation type
ENSG00000148123	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10819914	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10819917	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10989435	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10989436	0.85[ASN][1000 genomes]
rs10989437	0.85[ASN][1000 genomes]
rs10989438	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10989439	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10989441	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10989443	0.93[ASN][1000 genomes]
rs10989444	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10989445	0.93[ASN][1000 genomes]
rs10989447	0.90[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap]
rs10989449	0.98[ASN][1000 genomes]
rs10989451	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10989452	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989457	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10989458	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10989459	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989460	0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12237444	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs12237723	0.85[ASN][1000 genomes]
rs1341764	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1341765	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs1341766	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341767	0.90[CHB][hapmap];0.87[CHD][hapmap]
rs16920106	0.82[JPT][hapmap]
rs2052977	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2771073	0.82[JPT][hapmap]
rs411448	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4147116	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4742809	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs57966478	0.85[ASN][1000 genomes]
rs643697	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104021600-104021800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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