Variant report

Variant	rs10989447
Chromosome Location	chr9:103997988-103997989
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:103881299..103882276-chr9:103997471..103998449,5	MCF-7	breast:
2	chr9:103476676..103477573-chr9:103997190..103998381,4	MCF-7	breast:
3	chr9:103881471..103882167-chr9:103997476..103998117,4	MCF-7	breast:
4	chr9:103461355..103462154-chr9:103997901..103998719,2	MCF-7	breast:
5	chr9:103364362..103365291-chr9:103997516..103998642,7	MCF-7	breast:
6	chr9:103476469..103477475-chr9:103997510..103998443,4	MCF-7	breast:
7	chr9:103363051..103364166-chr9:103997474..103998411,6	MCF-7	breast:
8	chr9:103989448..103990972-chr9:103996592..103998132,2	K562	blood:

No data

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10819914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819917	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10989435	0.82[JPT][hapmap]
rs10989438	0.82[JPT][hapmap]
rs10989439	1.00[ASW][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs10989441	0.82[JPT][hapmap]
rs10989444	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10989449	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10989451	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989452	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10989453	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10989458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10989459	0.98[ASN][1000 genomes]
rs10989460	1.00[CEU][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12237444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12237965	0.90[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap]
rs1341764	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341765	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1341766	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1341767	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920106	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16920107	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1857028	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052977	0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs411448	0.82[JPT][hapmap]
rs4147116	0.82[JPT][hapmap]
rs643697	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103996200-103998000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:103997000-103998200	Enhancers	Brain Substantia Nigra	brain
3	chr9:103997200-103998000	Enhancers	HepG2	liver
4	chr9:103997200-103998200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:103997400-103998000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:103997400-103998000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:103997400-103998200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:103997400-103998200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:103997400-103998200	Enhancers	Liver	Liver
10	chr9:103997400-103998400	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr9:103997600-103998200	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr9:103997800-103998200	Enhancers	Brain Angular Gyrus	brain
13	chr9:103997800-103998800	Enhancers	Brain Cingulate Gyrus	brain
14	chr9:103997800-103998800	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:103997800-104000800	Weak transcription	Brain Anterior Caudate	brain

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