Variant report

Variant	rs643697
Chromosome Location	chr9:103972545-103972546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10819914	1.00[JPT][hapmap]
rs10819917	0.82[JPT][hapmap]
rs10989435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10989436	0.98[ASN][1000 genomes]
rs10989437	0.98[ASN][1000 genomes]
rs10989438	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10989439	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10989441	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10989443	0.81[ASN][1000 genomes]
rs10989444	0.82[JPT][hapmap]
rs10989445	0.81[ASN][1000 genomes]
rs10989447	0.82[JPT][hapmap]
rs10989449	0.85[ASN][1000 genomes]
rs10989451	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10989452	0.85[JPT][hapmap]
rs10989457	0.85[JPT][hapmap]
rs10989458	0.85[JPT][hapmap]
rs10989460	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12237444	0.85[JPT][hapmap]
rs12237723	0.98[ASN][1000 genomes]
rs12237965	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1341764	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1341765	0.85[JPT][hapmap]
rs16920106	0.82[JPT][hapmap]
rs2052977	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2255159	0.82[CEU][hapmap]
rs2567313	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2567317	0.81[CEU][hapmap]
rs2771073	0.93[CEU][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs2987729	0.88[CEU][hapmap]
rs2987730	0.88[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs2987742	0.85[CEU][hapmap]
rs411448	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147116	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4742809	0.96[CEU][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57966478	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103964600-103978400	Weak transcription	HepG2	liver
2	chr9:103970200-103973600	Weak transcription	Brain Hippocampus Middle	brain
3	chr9:103971800-103972600	Enhancers	Brain Anterior Caudate	brain
4	chr9:103972400-103980600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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