Variant report

Variant	rs316408
Chromosome Location	chr5:43066774-43066775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:387)
CpG islands
(count:0)
Chromatin interactive
region (count:37)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:387 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXP2	chr5:43066398-43067028	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr5:43065943-43067771	H1-hESC	embryonic stem cell:	n/a	n/a
3	TBL1XR1	chr5:43066538-43067682	K562	blood:	n/a	n/a
4	SMARCC1	chr5:43065831-43068011	Hela-S3	cervix:	n/a	n/a
5	CHD1	chr5:43064893-43067580	GM12878	blood:	n/a	n/a
6	BHLHE40	chr5:43065837-43067282	GM12878	blood:	n/a	n/a
7	POLR2A	chr5:43063699-43068095	H1-hESC	embryonic stem cell:	n/a	n/a
8	HDAC2	chr5:43066454-43067295	HepG2	liver:	n/a	n/a
9	MAX	chr5:43065794-43067439	HepG2	liver:	n/a	chr5:43066604-43066614
10	MAX	chr5:43065693-43067951	A549	lung:	n/a	chr5:43066604-43066614
11	POLR2A	chr5:43066206-43066809	K562	blood:	n/a	n/a
12	HMGN3	chr5:43066005-43067410	K562	blood:	n/a	n/a
13	STAT1	chr5:43066268-43067505	GM12878	blood:	n/a	chr5:43066409-43066420 chr5:43066285-43066292
14	ZBTB7A	chr5:43066661-43067162	K562	blood:	n/a	n/a
15	ATF2	chr5:43066311-43067362	GM12878	blood:	n/a	n/a
16	TAF1	chr5:43066394-43067359	HepG2	liver:	n/a	n/a
17	TCF12	chr5:43066774-43067242	GM12878	blood:	n/a	n/a
18	SMARCB1	chr5:43065917-43067848	Hela-S3	cervix:	n/a	n/a
19	RUNX3	chr5:43065496-43067460	GM12878	blood:	n/a	n/a
20	BCLAF1	chr5:43065861-43067383	GM12878	blood:	n/a	chr5:43066480-43066493 chr5:43066792-43066805
21	TEAD4	chr5:43066591-43067362	A549	lung:	n/a	n/a
22	CTCF	chr5:43064553-43067516	SK-N-SH	brain:	n/a	chr5:43065140-43065149
23	POLR2A	chr5:43064657-43068004	GM12878	blood:	n/a	n/a
24	RFX5	chr5:43066683-43067333	HepG2	liver:	n/a	n/a
25	YY1	chr5:43066331-43067325	ECC-1	luminal epithelium:	n/a	chr5:43066704-43066716 chr5:43066481-43066490 chr5:43066761-43066771 chr5:43066694-43066716 chr5:43066706-43066716
26	JUN	chr5:43066243-43067269	K562	blood:	n/a	n/a
27	POLR2A	chr5:43064721-43068001	GM12878	blood:	n/a	n/a
28	POLR2A	chr5:43065769-43067766	GM12892	blood:	n/a	n/a
29	MAX	chr5:43065907-43068007	K562	blood:	n/a	chr5:43066604-43066614
30	ZNF143	chr5:43066304-43067560	GM12878	blood:	n/a	chr5:43066611-43066621
31	SMC3	chr5:43066434-43067817	Hela-S3	cervix:	n/a	n/a
32	POLR2A	chr5:43066399-43067799	SK-N-SH	brain:	n/a	n/a
33	TAF7	chr5:43066234-43067331	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr5:43066328-43067515	H1-neurons	neurons:	n/a	n/a
35	MAX	chr5:43064743-43067718	Hela-S3	cervix:	n/a	chr5:43066604-43066614
36	REST	chr5:43066702-43067276	SK-N-SH	brain:	n/a	chr5:43066994-43067008
37	NFIC	chr5:43066705-43067353	HepG2	liver:	n/a	n/a
38	E2F6	chr5:43065951-43067789	K562	blood:	n/a	chr5:43066826-43066833
39	POLR2A	chr5:43066092-43067773	H1-hESC	embryonic stem cell:	n/a	n/a
40	MYC	chr5:43064704-43067504	K562	blood:	n/a	chr5:43066604-43066614
41	POLR2A	chr5:43065507-43067802	MCF-7	breast:	n/a	n/a
42	MXI1	chr5:43064468-43068129	SK-N-SH	brain:	n/a	n/a
43	SIN3AK20	chr5:43065869-43067496	PANC-1	pancreas:	n/a	n/a
44	YY1	chr5:43064825-43067985	SK-N-SH	brain:	n/a	chr5:43066704-43066716 chr5:43066481-43066490 chr5:43066761-43066771 chr5:43066694-43066716 chr5:43066706-43066716
45	HCFC1	chr5:43066200-43067731	K562	blood:	n/a	n/a
46	POLR2A	chr5:43064633-43067996	K562	blood:	n/a	n/a
47	ATF1	chr5:43066667-43067316	K562	blood:	n/a	n/a
48	ELK4	chr5:43066666-43067352	Hela-S3	cervix:	n/a	chr5:43067077-43067088
49	POLR2A	chr5:43065414-43068014	PANC-1	pancreas:	n/a	n/a
50	IRF1	chr5:43066343-43067745	K562	blood:	n/a	chr5:43066407-43066420 chr5:43066408-43066422 chr5:43066407-43066420 chr5:43066406-43066420 chr5:43066408-43066422 chr5:43066406-43066423 chr5:43066408-43066421 chr5:43066407-43066420 chr5:43066407-43066421 chr5:43066409-43066420 chr5:43066407-43066420

No data

(count:37 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:43065577..43067489-chr5:43555755..43557297,2	K562	blood:
2	chr5:43062770..43067811-chr5:43482181..43486392,9	K562	blood:
3	chr5:43066645..43067204-chr6:20403142..20403937,2	Hela-S3	cervix:
4	chr5:43062052..43069089-chr5:43119705..43123366,12	MCF-7	breast:
5	chr5:42907010..42910562-chr5:43064999..43067630,3	MCF-7	breast:
6	chr5:43064995..43071284-chr5:43119667..43123996,15	MCF-7	breast:
7	chr5:43026063..43028534-chr5:43065548..43067073,2	MCF-7	breast:
8	chr5:43063931..43068016-chr5:43554200..43557480,3	K562	blood:
9	chr5:43037720..43044659-chr5:43062293..43069444,31	K562	blood:
10	chr5:42927540..42930001-chr5:43065778..43067450,2	MCF-7	breast:
11	chr5:43017018..43021813-chr5:43064660..43069370,12	MCF-7	breast:
12	chr1:156621798..156622731-chr5:43066361..43067058,2	Hela-S3	cervix:
13	chr5:43065277..43067135-chr5:43287276..43290196,2	K562	blood:
14	chr5:43063463..43067998-chr5:43119333..43125586,12	K562	blood:
15	chr5:43038662..43048059-chr5:43059399..43070773,40	MCF-7	breast:
16	chr5:42907363..42912501-chr5:43064737..43069149,8	MCF-7	breast:
17	chr5:43006860..43010287-chr5:43063692..43067440,8	K562	blood:
18	chr20:49347801..49350191-chr5:43066077..43068758,2	MCF-7	breast:
19	chr5:43064858..43068068-chr5:43482667..43486392,7	K562	blood:
20	chr5:43036901..43050217-chr5:43060442..43069391,53	MCF-7	breast:
21	chr5:43005189..43014948-chr5:43062554..43069130,17	MCF-7	breast:
22	chr5:43063723..43068505-chr5:43119531..43125230,17	K562	blood:
23	chr1:70670811..70671614-chr5:43066519..43067160,2	Hela-S3	cervix:
24	chr5:43006765..43010626-chr5:43063692..43068627,9	K562	blood:
25	chr5:43017649..43018569-chr5:43066351..43067489,3	Hela-S3	cervix:
26	chr5:43015093..43022227-chr5:43063428..43069370,31	MCF-7	breast:
27	chr5:40679271..40679891-chr5:43066684..43067210,2	Hela-S3	cervix:
28	chr5:41924171..41926713-chr5:43064683..43066902,2	K562	blood:
29	chr5:43061295..43063286-chr5:43064759..43067146,4	MCF-7	breast:
30	chr5:43066392..43067353-chr6:30584621..30585483,3	Hela-S3	cervix:
31	chr5:43065608..43069318-chr5:43481836..43485606,6	MCF-7	breast:
32	chr5:43064535..43068771-chr5:43312463..43314872,5	MCF-7	breast:
33	chr17:38473520..38475721-chr5:43065079..43067776,2	MCF-7	breast:
34	chr5:43006162..43011722-chr5:43063736..43068779,9	MCF-7	breast:
35	chr5:33440525..33441100-chr5:43066551..43067396,2	Hela-S3	cervix:
36	chr5:43034726..43053192-chr5:43061725..43074206,66	K562	blood:
37	chr11:67777806..67778578-chr5:43066246..43066840,2	Hela-S3	cervix:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC114947.1.1-2	chr5:43065761-43067736	XLOC_004366
2	lnc-AC114947.1.1-2	chr5:43066192-43067888	XLOC_004366
3	lnc-AC114947.1.1-2	chr5:43065261-43067736	XLOC_004366
4	lnc-AC114947.1.1-2	chr5:43066235-43067736	XLOC_004366
5	lnc-AC114947.1.1-2	chr5:43066191-43067736	XLOC_004366
6	lnc-C5orf39-1	chr5:43065289-43067073	NONHSAT101276
7	lnc-C5orf39-1	chr5:43066489-43067168	NONHSAT101278

No data

Variant related genes	Relation type
ZNF131	TF binding region
ENSG00000151876	Chromatin interaction
ENSG00000172239	Chromatin interaction
ENSG00000177721	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000177738	Chromatin interaction
ENSG00000172262	Chromatin interaction
ENSG00000251656	Chromatin interaction
ENSG00000272144	Chromatin interaction
ENSG00000124171	Chromatin interaction
ENSG00000113407	Chromatin interaction
ENSG00000131759	Chromatin interaction
ENSG00000171522	Chromatin interaction
ENSG00000006534	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000261604	Chromatin interaction
ENSG00000249572	Chromatin interaction
ENSG00000271788	Chromatin interaction
ENSG00000116754	Chromatin interaction
ENSG00000215068	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000112972	Chromatin interaction
ENSG00000251131	Chromatin interaction
ENSG00000066557	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10064003	0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs10522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10941604	0.95[JPT][hapmap]
rs10941605	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs11747714	0.82[CHD][hapmap];0.95[JPT][hapmap]
rs12697439	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13169690	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13170208	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13178479	0.81[ASN][1000 genomes]
rs1542369	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1574407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs160709	0.81[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1618891	0.90[CHD][hapmap];0.90[JPT][hapmap]
rs1624415	0.90[CHD][hapmap];0.90[JPT][hapmap]
rs178415	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs186324	0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs2100473	0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs222060	0.81[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2329994	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2329995	0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2444779	0.88[YRI][hapmap]
rs2548334	0.83[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.92[YRI][hapmap]
rs2548350	0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap]
rs2548353	0.95[JPT][hapmap];0.96[YRI][hapmap]
rs2548356	0.95[JPT][hapmap];0.92[YRI][hapmap]
rs2603295	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2603636	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2603644	0.95[JPT][hapmap];0.84[YRI][hapmap]
rs2603656	0.83[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap]
rs2882295	0.95[JPT][hapmap];0.96[YRI][hapmap]
rs309909	0.81[ASW][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];0.92[YRI][hapmap]
rs309914	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs309923	0.84[CHD][hapmap];0.95[JPT][hapmap]
rs309924	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs309925	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs309926	0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs309927	0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs309950	0.82[CHD][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.92[YRI][hapmap]
rs316395	0.87[ASN][1000 genomes]
rs316396	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316398	0.83[CEU][hapmap]
rs316400	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs316402	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs316403	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs316404	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316406	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs316413	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs316414	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[MKK][hapmap];0.92[YRI][hapmap];0.81[ASN][1000 genomes]
rs316416	0.81[ASN][1000 genomes]
rs316419	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs316422	0.87[ASN][1000 genomes]
rs3909456	0.84[CHD][hapmap];0.95[JPT][hapmap]
rs4033115	0.81[ASN][1000 genomes]
rs4092293	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4092294	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs512921	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs515970	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs543569	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs557076	0.90[CHD][hapmap];0.90[JPT][hapmap]
rs565761	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs567884	0.83[CEU][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap]
rs613825	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs643307	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6451660	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6451661	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6451662	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6875214	0.84[ASN][1000 genomes]
rs6879130	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6892422	0.89[CHD][hapmap];0.90[JPT][hapmap]
rs724430	0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs768441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7715065	0.95[JPT][hapmap]
rs782971	0.85[CHD][hapmap];0.90[JPT][hapmap]
rs782978	0.83[CEU][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.84[YRI][hapmap]
rs782984	0.90[CHD][hapmap];0.90[JPT][hapmap]
rs903391	0.90[JPT][hapmap];0.82[YRI][hapmap]
rs9292862	0.81[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
2	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
3	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
4	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
5	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
6	nsv534185	chr5:42804840-43067088	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	165 gene(s)	inside rSNPs	diseases
7	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
8	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
9	nsv870299	chr5:43053679-43107880	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs316408	ZNF131	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43063600-43068200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr5:43063800-43068200	Active TSS	A549	lung
3	chr5:43064000-43067800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr5:43064000-43068000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr5:43064000-43068400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:43064200-43068200	Active TSS	H9 Cell Line	embryonic stem cell
7	chr5:43064200-43068200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:43064200-43068400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr5:43064200-43069000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:43064400-43067200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:43064400-43067400	Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr5:43064400-43067600	Active TSS	Brain Hippocampus Middle	brain
13	chr5:43064400-43067600	Active TSS	Brain Substantia Nigra	brain
14	chr5:43064400-43067600	Active TSS	Colonic Mucosa	Colon
15	chr5:43064400-43067800	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr5:43064400-43067800	Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr5:43064400-43067800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:43064400-43067800	Active TSS	Brain Cingulate Gyrus	brain
19	chr5:43064400-43067800	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr5:43064400-43067800	Active TSS	Fetal Brain Female	brain
21	chr5:43064400-43067800	Active TSS	Fetal Intestine Large	intestine
22	chr5:43064400-43067800	Active TSS	Fetal Lung	lung
23	chr5:43064400-43067800	Active TSS	Thymus	Thymus
24	chr5:43064400-43068000	Active TSS	Esophagus	oesophagus
25	chr5:43064400-43068000	Active TSS	Fetal Kidney	kidney
26	chr5:43064400-43068000	Active TSS	Fetal Stomach	stomach
27	chr5:43064400-43068000	Active TSS	Rectal Smooth Muscle	rectum
28	chr5:43064400-43068000	Active TSS	Stomach Smooth Muscle	stomach
29	chr5:43064400-43068200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:43064400-43068200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr5:43064400-43068200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:43064400-43068200	Active TSS	Psoas Muscle	Psoas
33	chr5:43064400-43068200	Active TSS	Right Ventricle	heart
34	chr5:43064400-43068400	Active TSS	NHDF-Ad	bronchial
35	chr5:43064600-43066800	Active TSS	Right Atrium	heart
36	chr5:43064600-43067400	ZNF genes & repeats	Fetal Brain Male	brain
37	chr5:43064600-43067600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr5:43064600-43067600	Active TSS	Brain Angular Gyrus	brain
39	chr5:43064600-43067600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
40	chr5:43064600-43067800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:43064600-43067800	Active TSS	Brain Anterior Caudate	brain
42	chr5:43064600-43067800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr5:43064600-43068000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr5:43064600-43068000	Active TSS	Colon Smooth Muscle	Colon
45	chr5:43064600-43068000	Active TSS	Small Intestine	intestine
46	chr5:43064600-43068000	Active TSS	Stomach Mucosa	stomach
47	chr5:43064600-43068200	Active TSS	Gastric	stomach
48	chr5:43064600-43068200	Active TSS	Ovary	ovary
49	chr5:43064600-43068200	Active TSS	Sigmoid Colon	Sigmoid Colon
50	chr5:43064600-43068400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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