Variant report

Variant rs2548350
Chromosome Location chr5:42988422-42988423
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:42982800-42989400 Weak transcription Adipose Nuclei Adipose
2 chr5:42982800-42990800 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr5:42983000-42990000 Weak transcription Fetal Thymus thymus
4 chr5:42984400-42988600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
5 chr5:42984400-42989400 Enhancers Primary T killer memory cells from peripheral blood blood
6 chr5:42985400-42991400 Weak transcription Placenta Placenta
7 chr5:42985800-42988800 Weak transcription Primary B cells from peripheral blood blood
8 chr5:42986000-42989000 Weak transcription Primary hematopoietic stem cells blood
9 chr5:42986200-42988600 Genic enhancers Primary T regulatory cells fromperipheralblood blood
10 chr5:42986200-42988800 Enhancers Primary T helper naive cells fromperipheralblood blood
11 chr5:42986200-42989200 Enhancers Primary T helper 17 cells PMA-I stimulated --
12 chr5:42986200-42989400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr5:42986200-42990000 Weak transcription Spleen Spleen
14 chr5:42986200-42990200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr5:42986400-42989000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr5:42986400-42989000 Enhancers Primary T helper cells fromperipheralblood blood
17 chr5:42986400-42989400 Weak transcription NH-A brain
18 chr5:42986600-42989400 Weak transcription Hela-S3 cervix
19 chr5:42986600-42989400 Weak transcription NHDF-Ad bronchial
20 chr5:42986600-42989400 Weak transcription Osteobl bone
21 chr5:42986800-42988600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr5:42986800-42991200 Weak transcription NHLF lung
23 chr5:42987000-42989400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
24 chr5:42987000-42990000 Weak transcription Monocytes-CD14+_RO01746 blood
25 chr5:42987200-42990200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr5:42987200-42992400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr5:42987400-42989400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr5:42987600-42989000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr5:42988000-42989600 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
30 chr5:42988200-42988600 Enhancers Primary T cells fromperipheralblood blood
31 chr5:42988200-42988600 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
32 chr5:42988200-42988800 Enhancers Primary T cells from cord blood blood
33 chr5:42988200-42989600 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
34 chr5:42988200-42989800 Enhancers A549 lung
35 chr5:42988400-42988600 ZNF genes & repeats Primary B cells from cord blood blood
36 chr5:42988400-42988600 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
37 chr5:42988400-42988600 Flanking Active TSS HUVEC blood vessel
38 chr5:42988400-42989200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
39 chr5:42988400-42989400 Enhancers Primary mononuclear cells fromperipheralblood Blood
40 chr5:42988400-42996200 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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