Variant report

Variant rs2100473
Chromosome Location chr5:42990378-42990379
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:42982800-42990800 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr5:42985400-42991400 Weak transcription Placenta Placenta
3 chr5:42986800-42991200 Weak transcription NHLF lung
4 chr5:42987200-42992400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr5:42988400-42996200 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr5:42988800-42990400 ZNF genes & repeats Dnd41 blood
7 chr5:42988800-42991600 Flanking Active TSS Primary T cells from cord blood blood
8 chr5:42988800-42991600 Flanking Active TSS HUVEC blood vessel
9 chr5:42988800-42992000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
10 chr5:42989000-42991800 Flanking Active TSS Primary T helper cells fromperipheralblood blood
11 chr5:42989200-42990600 Enhancers Primary B cells from cord blood blood
12 chr5:42989400-42990800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr5:42989400-42990800 Bivalent/Poised TSS Duodenum Mucosa Duodenum
14 chr5:42989400-42991000 Enhancers Adipose Nuclei Adipose
15 chr5:42989400-42991200 Enhancers Primary B cells from peripheral blood blood
16 chr5:42989400-42991800 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
17 chr5:42989400-42992000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr5:42989400-42992600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr5:42989600-42990800 Weak transcription NH-A brain
20 chr5:42989600-42991000 Enhancers Skeletal Muscle Female skeletal muscle
21 chr5:42989800-42991200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr5:42989800-42991400 Weak transcription A549 lung
23 chr5:42990000-42990400 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
24 chr5:42990000-42990400 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
25 chr5:42990000-42990400 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
26 chr5:42990000-42990400 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
27 chr5:42990000-42990400 Enhancers Colonic Mucosa Colon
28 chr5:42990000-42990400 Flanking Active TSS Hela-S3 cervix
29 chr5:42990000-42990600 Bivalent/Poised TSS Rectal Mucosa Donor 29 rectum
30 chr5:42990000-42990800 Enhancers Primary hematopoietic stem cells blood
31 chr5:42990000-42990800 Enhancers Monocytes-CD14+_RO01746 blood
32 chr5:42990000-42991200 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
33 chr5:42990000-42991200 Enhancers Fetal Thymus thymus
34 chr5:42990000-42991200 Flanking Active TSS Thymus Thymus
35 chr5:42990000-42991400 Enhancers Primary monocytes fromperipheralblood blood
36 chr5:42990000-42991400 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
37 chr5:42990000-42991400 Enhancers Spleen Spleen
38 chr5:42990000-42991600 Flanking Active TSS Primary T helper cells PMA-I stimulated --
39 chr5:42990000-42991800 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
40 chr5:42990000-42991800 Flanking Active TSS Primary T cells fromperipheralblood blood
41 chr5:42990000-42991800 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
42 chr5:42990200-42990400 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
43 chr5:42990200-42990400 Flanking Active TSS Osteobl bone
44 chr5:42990200-42990600 Active TSS Primary T killer memory cells from peripheral blood blood
45 chr5:42990200-42990600 Enhancers GM12878-XiMat blood
46 chr5:42990200-42990600 Active TSS K562 blood
47 chr5:42990200-42990800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr5:42990200-42990800 Enhancers NHDF-Ad bronchial
49 chr5:42990200-42991200 Enhancers Primary neutrophils fromperipheralblood blood
50 chr5:42990200-42991200 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin

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